fix reference check issue with paths

ebulk

@@ -93,18 +93,20 @@ function checkParameters {
 	  fi
       fi
       EBULK_DATASET_FILE="$DATASET_DIR$EBULK_DATASET_FILE_NAME"
-      if ! [[ $REFERENCE =~ $re ]] ; then
-        if [ "$REFERENCE" = "." ] && [[ -z "$STORAGE" ]] ; then
-          echo
-          echo -e "${ORANGE}[ERROR] You are not in a dataset directory ${GREEN}'$REFERENCE'${ORANGE}.${NC}"
-          echo
-        else
-          echo
-          echo -e "${ORANGE}[ERROR] Error in argument: invalid dataset name ${GREEN}'$REFERENCE'${ORANGE}.${NC}"
-          echo -e "${ORANGE}[ERROR] Only alphanumerics, dots ( . ), underscores ( _ ) and hyphens ( - ) are allowed.${NC}"
-          echo
+      if [ "$ALWAYS_YES" = "true" ] ; then
+        if ! [[ $REFERENCE =~ $re ]] ; then
+          if [ "$REFERENCE" = "." ] && [[ -z "$STORAGE" ]] ; then
+            echo
+            echo -e "${ORANGE}[ERROR] You are not in a dataset directory ${GREEN}'$REFERENCE'${ORANGE}.${NC}"
+            echo
+          else
+            echo
+            echo -e "${ORANGE}[ERROR] Error in argument: invalid dataset name ${GREEN}'$REFERENCE'${ORANGE}.${NC}"
+            echo -e "${ORANGE}[ERROR] Only alphanumerics, dots ( . ), underscores ( _ ) and hyphens ( - ) are allowed.${NC}"
+            echo
+          fi
+          helpReadme >&2; return 1
         fi
-        helpReadme >&2; return 1
       fi
       if [[ $DATASET_DIR != $REFERENCE ]]; then
 	  if [ "$REFERENCE" = "." ] ; then
@@ -697,7 +699,7 @@ while [ "$1" != "" ]; do
     shift
 done
 
-for ELEMENT in '' '-d' '--directory' '-s' '--storage' '-cs' '--custom-storage' '-a' '--advanced' '-c' '--chunk' '-bs' '--batch-size' '-dc' '--discard-changes' '-dd' '--set-description'; do
+for ELEMENT in '' '-d' '--directory' '-s' '--storage' '-cs' '--custom-storage' '-a' '--advanced' '-c' '--chunk' '-bs' '--batch-size' '-y' '--yes' '-dc' '--discard-changes' '-dd' '--set-description'; do
   if [ "$ELEMENT" = "$REFERENCE" ]; then
 	REFERENCE="."
   fi