There is a problem where the resource flags sometimes contain bits from
the address part of the PCI BAR, especially when you have the low address
bit set for an IO BAR.

(bit 3 of a PCI IO BAR is an address bit, and (bar & 0xf) propagates this
to res->flags).

This exists in Ivan Kokshaysky PCI patches, and so far hasn't made it into
the kernel.  It's required for IDE on certain ARM machines to even work.