When merging a transitive_list, copy the list

Cython/Build/Dependencies.py

@@ -216,11 +216,12 @@ class DistutilsInfo(object):
                 self.values[key] = value
             elif type is transitive_list:
                 if key in self.values:
-                    all = self.values[key]
+                    # Change a *copy* of the list (Trac #845)
+                    all = self.values[key][:]
                     for v in value:
                         if v not in all:
                             all.append(v)
-                else:
+                    value = all
                 self.values[key] = value
         return self
 
@@ -250,8 +251,7 @@ class DistutilsInfo(object):
         for key, value in self.values.items():
             type = distutils_settings[key]
             if type in [list, transitive_list]:
-                getattr(extension, key).extend(value)
-            else:
+                value = getattr(extension, key) + list(value)
             setattr(extension, key, value)
 
 @cython.locals(start=long, q=long, single_q=long, double_q=long, hash_mark=long,

tests/compile/distutils_libraries_T845.srctree

+PYTHON setup.py build_ext --inplace
+
+######## setup.py ########
+
+from Cython.Build import cythonize
+from Cython.Distutils.extension import Extension
+
+ext_modules = [
+    Extension("a", ["a.pyx"]),
+    Extension("x", ["x.pyx"]),
+    Extension("y", ["y.pyx"]),
+]
+
+ext_modules = cythonize(ext_modules)
+
+assert ext_modules[1].libraries == ["lib_x"]
+assert ext_modules[2].libraries == ["lib_y"]
+
+######## libx.pxd ########
+# distutils: libraries = lib_x
+
+######## liby.pxd ########
+# distutils: libraries = lib_y
+
+######## a.pyx ########
+cimport libx
+cimport liby
+
+######## x.pyx ########
+cimport libx
+
+######## y.pyx ########
+cimport liby