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Gwenaël Samain
cython
Commits
5ecfc44d
Commit
5ecfc44d
authored
Sep 23, 2008
by
Dag Sverre Seljebotn
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Plain Diff
Buffers: cast option (#76)
Yet more really low-hanging fruit...
parent
b9ffa8b7
Changes
4
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4 changed files
with
99 additions
and
29 deletions
+99
-29
Cython/Compiler/Buffer.py
Cython/Compiler/Buffer.py
+39
-23
Cython/Compiler/PyrexTypes.py
Cython/Compiler/PyrexTypes.py
+9
-6
tests/run/bufaccess.pyx
tests/run/bufaccess.pyx
+32
-0
tests/run/numpy_test.pyx
tests/run/numpy_test.pyx
+19
-0
No files found.
Cython/Compiler/Buffer.py
View file @
5ecfc44d
...
@@ -113,8 +113,8 @@ class IntroduceBufferAuxiliaryVars(CythonTransform):
...
@@ -113,8 +113,8 @@ class IntroduceBufferAuxiliaryVars(CythonTransform):
#
#
# Analysis
# Analysis
#
#
buffer_options
=
(
"dtype"
,
"ndim"
,
"mode"
,
"negative_indices"
)
# ordered!
buffer_options
=
(
"dtype"
,
"ndim"
,
"mode"
,
"negative_indices"
,
"cast"
)
# ordered!
buffer_defaults
=
{
"ndim"
:
1
,
"mode"
:
"full"
,
"negative_indices"
:
True
}
buffer_defaults
=
{
"ndim"
:
1
,
"mode"
:
"full"
,
"negative_indices"
:
True
,
"cast"
:
False
}
buffer_positional_options_count
=
1
# anything beyond this needs keyword argument
buffer_positional_options_count
=
1
# anything beyond this needs keyword argument
ERR_BUF_OPTION_UNKNOWN
=
'"%s" is not a buffer option'
ERR_BUF_OPTION_UNKNOWN
=
'"%s" is not a buffer option'
...
@@ -124,7 +124,7 @@ ERR_BUF_MISSING = '"%s" missing'
...
@@ -124,7 +124,7 @@ ERR_BUF_MISSING = '"%s" missing'
ERR_BUF_MODE
=
'Only allowed buffer modes are: "c", "fortran", "full", "strided" (as a compile-time string)'
ERR_BUF_MODE
=
'Only allowed buffer modes are: "c", "fortran", "full", "strided" (as a compile-time string)'
ERR_BUF_NDIM
=
'ndim must be a non-negative integer'
ERR_BUF_NDIM
=
'ndim must be a non-negative integer'
ERR_BUF_DTYPE
=
'dtype must be "object", numeric type or a struct'
ERR_BUF_DTYPE
=
'dtype must be "object", numeric type or a struct'
ERR_BUF_
NEGATIVE_INDICES
=
'negative_indices
must be a boolean'
ERR_BUF_
BOOL
=
'"%s"
must be a boolean'
def
analyse_buffer_options
(
globalpos
,
env
,
posargs
,
dictargs
,
defaults
=
None
,
need_complete
=
True
):
def
analyse_buffer_options
(
globalpos
,
env
,
posargs
,
dictargs
,
defaults
=
None
,
need_complete
=
True
):
"""
"""
...
@@ -179,9 +179,13 @@ def analyse_buffer_options(globalpos, env, posargs, dictargs, defaults=None, nee
...
@@ -179,9 +179,13 @@ def analyse_buffer_options(globalpos, env, posargs, dictargs, defaults=None, nee
if
mode
and
not
(
mode
in
(
'full'
,
'strided'
,
'c'
,
'fortran'
)):
if
mode
and
not
(
mode
in
(
'full'
,
'strided'
,
'c'
,
'fortran'
)):
raise
CompileError
(
globalpos
,
ERR_BUF_MODE
)
raise
CompileError
(
globalpos
,
ERR_BUF_MODE
)
negative_indices
=
options
.
get
(
"negative_indices"
)
def
assert_bool
(
name
):
if
mode
and
not
isinstance
(
negative_indices
,
bool
):
x
=
options
.
get
(
name
)
raise
CompileError
(
globalpos
,
ERR_BUF_NEGATIVE_INDICES
)
if
not
isinstance
(
x
,
bool
):
raise
CompileError
(
globalpos
,
ERR_BUF_BOOL
%
name
)
assert_bool
(
'negative_indices'
)
assert_bool
(
'cast'
)
return
options
return
options
...
@@ -234,13 +238,15 @@ def put_acquire_arg_buffer(entry, code, pos):
...
@@ -234,13 +238,15 @@ def put_acquire_arg_buffer(entry, code, pos):
code
.
globalstate
.
use_utility_code
(
acquire_utility_code
)
code
.
globalstate
.
use_utility_code
(
acquire_utility_code
)
buffer_aux
=
entry
.
buffer_aux
buffer_aux
=
entry
.
buffer_aux
getbuffer_cname
=
get_getbuffer_code
(
entry
.
type
.
dtype
,
code
)
getbuffer_cname
=
get_getbuffer_code
(
entry
.
type
.
dtype
,
code
)
# Acquire any new buffer
# Acquire any new buffer
code
.
putln
(
code
.
error_goto_if
(
"%s((PyObject*)%s, &%s, %s, %d) == -1"
%
(
code
.
putln
(
code
.
error_goto_if
(
"%s((PyObject*)%s, &%s, %s, %d
, %d
) == -1"
%
(
getbuffer_cname
,
getbuffer_cname
,
entry
.
cname
,
entry
.
cname
,
entry
.
buffer_aux
.
buffer_info_var
.
cname
,
entry
.
buffer_aux
.
buffer_info_var
.
cname
,
get_flags
(
buffer_aux
,
entry
.
type
),
get_flags
(
buffer_aux
,
entry
.
type
),
entry
.
type
.
ndim
),
pos
))
entry
.
type
.
ndim
,
int
(
entry
.
type
.
cast
)),
pos
))
# An exception raised in arg parsing cannot be catched, so no
# An exception raised in arg parsing cannot be catched, so no
# need to care about the buffer then.
# need to care about the buffer then.
put_unpack_buffer_aux_into_scope
(
buffer_aux
,
entry
.
type
.
mode
,
code
)
put_unpack_buffer_aux_into_scope
(
buffer_aux
,
entry
.
type
.
mode
,
code
)
...
@@ -274,11 +280,12 @@ def put_assign_to_buffer(lhs_cname, rhs_cname, buffer_aux, buffer_type,
...
@@ -274,11 +280,12 @@ def put_assign_to_buffer(lhs_cname, rhs_cname, buffer_aux, buffer_type,
bufstruct
=
buffer_aux
.
buffer_info_var
.
cname
bufstruct
=
buffer_aux
.
buffer_info_var
.
cname
flags
=
get_flags
(
buffer_aux
,
buffer_type
)
flags
=
get_flags
(
buffer_aux
,
buffer_type
)
getbuffer
=
"%s((PyObject*)%%s, &%s, %s, %d)"
%
(
get_getbuffer_code
(
buffer_type
.
dtype
,
code
),
getbuffer
=
"%s((PyObject*)%%s, &%s, %s, %d
, %d
)"
%
(
get_getbuffer_code
(
buffer_type
.
dtype
,
code
),
# note: object is filled in later (%%s)
# note: object is filled in later (%%s)
bufstruct
,
bufstruct
,
flags
,
flags
,
buffer_type
.
ndim
)
buffer_type
.
ndim
,
int
(
buffer_type
.
cast
))
if
is_initialized
:
if
is_initialized
:
# Release any existing buffer
# Release any existing buffer
...
@@ -572,10 +579,11 @@ def get_getbuffer_code(dtype, code):
...
@@ -572,10 +579,11 @@ def get_getbuffer_code(dtype, code):
if
not
code
.
globalstate
.
has_utility_code
(
name
):
if
not
code
.
globalstate
.
has_utility_code
(
name
):
code
.
globalstate
.
use_utility_code
(
acquire_utility_code
)
code
.
globalstate
.
use_utility_code
(
acquire_utility_code
)
itemchecker
=
get_ts_check_item
(
dtype
,
code
)
itemchecker
=
get_ts_check_item
(
dtype
,
code
)
dtype_cname
=
dtype
.
declaration_code
(
""
)
utilcode
=
[
dedent
(
"""
utilcode
=
[
dedent
(
"""
static int %s(PyObject* obj, Py_buffer* buf, int flags, int nd); /*proto*/
static int %s(PyObject* obj, Py_buffer* buf, int flags, int nd
, int cast
); /*proto*/
"""
)
%
name
,
dedent
(
"""
"""
)
%
name
,
dedent
(
"""
static int %(name)s(PyObject* obj, Py_buffer* buf, int flags, int nd) {
static int %(name)s(PyObject* obj, Py_buffer* buf, int flags, int nd
, int cast
) {
const char* ts;
const char* ts;
if (obj == Py_None) {
if (obj == Py_None) {
__Pyx_ZeroBuffer(buf);
__Pyx_ZeroBuffer(buf);
...
@@ -587,6 +595,7 @@ def get_getbuffer_code(dtype, code):
...
@@ -587,6 +595,7 @@ def get_getbuffer_code(dtype, code):
__Pyx_BufferNdimError(buf, nd);
__Pyx_BufferNdimError(buf, nd);
goto fail;
goto fail;
}
}
if (!cast) {
ts = buf->format;
ts = buf->format;
ts = __Pyx_ConsumeWhitespace(ts);
ts = __Pyx_ConsumeWhitespace(ts);
if (!ts) goto fail;
if (!ts) goto fail;
...
@@ -599,6 +608,13 @@ def get_getbuffer_code(dtype, code):
...
@@ -599,6 +608,13 @@ def get_getbuffer_code(dtype, code):
"Expected non-struct buffer data type (expected end, got '%%s')", ts);
"Expected non-struct buffer data type (expected end, got '%%s')", ts);
goto fail;
goto fail;
}
}
} else {
if (buf->itemsize != sizeof(%(dtype_cname)s)) {
PyErr_SetString(PyExc_ValueError,
"Attempted cast of buffer to datatype of different size.");
goto fail;
}
}
if (buf->suboffsets == NULL) buf->suboffsets = __Pyx_minusones;
if (buf->suboffsets == NULL) buf->suboffsets = __Pyx_minusones;
return 0;
return 0;
fail:;
fail:;
...
...
Cython/Compiler/PyrexTypes.py
View file @
5ecfc44d
...
@@ -200,18 +200,21 @@ class BufferType(BaseType):
...
@@ -200,18 +200,21 @@ class BufferType(BaseType):
# dtype PyrexType
# dtype PyrexType
# ndim int
# ndim int
# mode str
# mode str
# is_buffer boolean
# negative_indices bool
# writable boolean
# cast bool
# is_buffer bool
# writable bool
is_buffer
=
1
is_buffer
=
1
writable
=
True
writable
=
True
def
__init__
(
self
,
base
,
dtype
,
ndim
,
mode
,
negative_indices
):
def
__init__
(
self
,
base
,
dtype
,
ndim
,
mode
,
negative_indices
,
cast
):
self
.
base
=
base
self
.
base
=
base
self
.
dtype
=
dtype
self
.
dtype
=
dtype
self
.
ndim
=
ndim
self
.
ndim
=
ndim
self
.
buffer_ptr_type
=
CPtrType
(
dtype
)
self
.
buffer_ptr_type
=
CPtrType
(
dtype
)
self
.
mode
=
mode
self
.
mode
=
mode
self
.
negative_indices
=
negative_indices
self
.
negative_indices
=
negative_indices
self
.
cast
=
cast
def
as_argument_type
(
self
):
def
as_argument_type
(
self
):
return
self
return
self
...
...
tests/run/bufaccess.pyx
View file @
5ecfc44d
...
@@ -943,7 +943,32 @@ def assign_to_object(object[object] buf, int idx, obj):
...
@@ -943,7 +943,32 @@ def assign_to_object(object[object] buf, int idx, obj):
"""
"""
buf
[
idx
]
=
obj
buf
[
idx
]
=
obj
#
# cast option
#
@
testcase
def
buffer_cast
(
object
[
unsigned
int
,
cast
=
True
]
buf
,
int
idx
):
"""
Round-trip a signed int through unsigned int buffer access.
>>> A = IntMockBuffer(None, [-100])
>>> buffer_cast(A, 0)
-100
"""
cdef
unsigned
int
data
=
buf
[
idx
]
return
<
int
>
data
@
testcase
def
buffer_cast_fails
(
object
[
char
,
cast
=
True
]
buf
):
"""
Cannot cast between datatype of different sizes.
>>> buffer_cast_fails(IntMockBuffer(None, [0]))
Traceback (most recent call last):
...
ValueError: Attempted cast of buffer to datatype of different size.
"""
return
buf
[
0
]
#
#
...
@@ -1101,6 +1126,13 @@ cdef class MockBuffer:
...
@@ -1101,6 +1126,13 @@ cdef class MockBuffer:
cdef
get_default_format
(
self
):
cdef
get_default_format
(
self
):
print
"ERROR, not subclassed"
,
self
.
__class__
print
"ERROR, not subclassed"
,
self
.
__class__
cdef
class
CharMockBuffer
(
MockBuffer
):
cdef
int
write
(
self
,
char
*
buf
,
object
value
)
except
-
1
:
(
<
char
*>
buf
)[
0
]
=
<
int
>
value
return
0
cdef
get_itemsize
(
self
):
return
sizeof
(
char
)
cdef
get_default_format
(
self
):
return
b"@b"
cdef
class
IntMockBuffer
(
MockBuffer
):
cdef
class
IntMockBuffer
(
MockBuffer
):
cdef
int
write
(
self
,
char
*
buf
,
object
value
)
except
-
1
:
cdef
int
write
(
self
,
char
*
buf
,
object
value
)
except
-
1
:
(
<
int
*>
buf
)[
0
]
=
<
int
>
value
(
<
int
*>
buf
)[
0
]
=
<
int
>
value
...
...
tests/run/numpy_test.pyx
View file @
5ecfc44d
...
@@ -138,6 +138,13 @@ try:
...
@@ -138,6 +138,13 @@ try:
...
...
ValueError: only objects, int and float dtypes supported for ndarray buffer access so far (dtype is 20)
ValueError: only objects, int and float dtypes supported for ndarray buffer access so far (dtype is 20)
>>> test_good_cast()
True
>>> test_bad_cast()
Traceback (most recent call last):
...
ValueError: Attempted cast of buffer to datatype of different size.
"""
"""
except
:
except
:
__doc__
=
""
__doc__
=
""
...
@@ -225,3 +232,15 @@ def test_dtype(dtype, inc1):
...
@@ -225,3 +232,15 @@ def test_dtype(dtype, inc1):
a
=
np
.
array
([
0
,
10
],
dtype
=
dtype
)
a
=
np
.
array
([
0
,
10
],
dtype
=
dtype
)
inc1
(
a
)
inc1
(
a
)
if
a
[
1
]
!=
11
:
print
"failed!"
if
a
[
1
]
!=
11
:
print
"failed!"
def
test_good_cast
():
# Check that a signed int can round-trip through casted unsigned int access
cdef
np
.
ndarray
[
unsigned
int
,
cast
=
True
]
arr
=
np
.
array
([
-
100
],
dtype
=
'i'
)
cdef
unsigned
int
data
=
arr
[
0
]
return
-
100
==
<
int
>
data
def
test_bad_cast
():
# This should raise an exception
cdef
np
.
ndarray
[
long
,
cast
=
True
]
arr
=
np
.
array
([
1
],
dtype
=
'b'
)
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