Fix Gitaly duration timings for other CommitService RPCs
For many Gitaly RPCs, previously the `gitaly_duration_s` log timings only accounted for the initial request/response time. We now measure the total time it takes to consume the streaming response for the following RPCs: 1. CommitDelta 2. FilterShasWithSignatures 3. CommitDiff Part of https://gitlab.com/gitlab-org/gitlab/-/issues/30334
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