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Xavier Thompson
cython
Commits
8bda5665
Commit
8bda5665
authored
Aug 09, 2009
by
Kurt Smith
Committed by
Mark Florisson
Sep 30, 2011
Browse files
Options
Browse Files
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Plain Diff
moved memoryview initialization function from CythonUtilCode to pure C
parent
6343a2fb
Changes
3
Show whitespace changes
Inline
Side-by-side
Showing
3 changed files
with
219 additions
and
151 deletions
+219
-151
Cython/Compiler/CythonScope.py
Cython/Compiler/CythonScope.py
+1
-145
Cython/Compiler/ExprNodes.py
Cython/Compiler/ExprNodes.py
+24
-6
Cython/Compiler/MemoryView.py
Cython/Compiler/MemoryView.py
+194
-0
No files found.
Cython/Compiler/CythonScope.py
View file @
8bda5665
...
@@ -257,12 +257,6 @@ cdef full = Enum("<full axis access mode>")
...
@@ -257,12 +257,6 @@ cdef full = Enum("<full axis access mode>")
cdef extern from *:
cdef extern from *:
int __Pyx_GetBuffer(object, Py_buffer *, int)
int __Pyx_GetBuffer(object, Py_buffer *, int)
void __Pyx_ReleaseBuffer(Py_buffer *)
void __Pyx_ReleaseBuffer(Py_buffer *)
void __Pyx_XDECREF(object)
void __Pyx_DECREF(object)
void __Pyx_GIVEREF(object)
void __Pyx_INCREF(object)
void __Pyx_GOTREF(object)
cdef class memoryview(object):
cdef class memoryview(object):
...
@@ -277,145 +271,7 @@ cdef class memoryview(object):
...
@@ -277,145 +271,7 @@ cdef class memoryview(object):
cdef memoryview memoryview_cwrapper(object o, int flags):
cdef memoryview memoryview_cwrapper(object o, int flags):
return memoryview(o, flags)
return memoryview(o, flags)
"""
,
name
=
"view_code"
,
prefix
=
"__pyx_viewaxis_"
)
# XXX: put in #defines...
DEF BUF_MAX_NDIMS = %d
DEF __Pyx_MEMVIEW_DIRECT = 1
DEF __Pyx_MEMVIEW_PTR = 2
DEF __Pyx_MEMVIEW_FULL = 4
DEF __Pyx_MEMVIEW_CONTIG = 8
DEF __Pyx_MEMVIEW_STRIDED = 16
DEF __Pyx_MEMVIEW_FOLLOW = 32
cdef extern from *:
struct __pyx_obj_memoryview:
Py_buffer view
ctypedef struct __Pyx_mv_DimInfo:
Py_ssize_t shape, strides, suboffsets
ctypedef struct __Pyx_memviewslice:
__pyx_obj_memoryview *memview
char *data
__Pyx_mv_DimInfo diminfo[BUF_MAX_NDIMS]
cdef is_cf_contig(int *specs, int ndim):
is_c_contig = is_f_contig = False
# c_contiguous: 'follow', 'follow', ..., 'follow', 'contig'
if specs[ndim-1] & __Pyx_MEMVIEW_CONTIG:
for i in range(0, ndim-1):
if not (specs[i] & __Pyx_MEMVIEW_FOLLOW):
break
else:
is_c_contig = True
# f_contiguous: 'contig', 'follow', 'follow', ..., 'follow'
elif ndim > 1 and (specs[0] & __Pyx_MEMVIEW_CONTIG):
for i in range(1, ndim):
if not (specs[i] & __Pyx_MEMVIEW_FOLLOW):
break
else:
is_f_contig = True
return is_c_contig, is_f_contig
cdef bint DEBUG = 0
cdef object init_memviewslice_from_memview(
memoryview memview,
int *axes_specs,
int ndim,
Py_ssize_t itemsize,
char *format,
__Pyx_memviewslice *memviewslice):
if memviewslice.data or memviewslice.memview:
raise ValueError("memviewslice must be empty and initialized to NULL.")
cdef int i
if ndim > BUF_MAX_NDIMS:
raise ValueError("number of dimensions exceed maximum of" + str(BUF_MAX_NDIMS))
cdef Py_buffer pybuf = memview.view
if pybuf.ndim != ndim:
raise ValueError("incompatible number of dimensions.")
if DEBUG: print pybuf.ndim
cdef str pyx_format = pybuf.format
cdef str view_format = format
if pyx_format != view_format:
raise ValueError("Buffer and memoryview datatype formats do not match.")
if DEBUG: print pybuf.format
if itemsize != pybuf.itemsize:
raise ValueError("Buffer and memoryview itemsize do not match.")
if DEBUG: print pybuf.itemsize
if not pybuf.strides:
raise ValueError("no stride information provided.")
has_suboffsets = True
if not pybuf.suboffsets:
has_suboffsets = False
is_c_contig, is_f_contig = is_cf_contig(axes_specs, ndim)
cdef int spec = 0
for i in range(ndim):
istr = str(i)
spec = axes_specs[i]
if spec & __Pyx_MEMVIEW_CONTIG:
if pybuf.strides[i] != 1:
raise ValueError("Dimension "+istr+" in axes specification is incompatible with buffer.")
if spec & (__Pyx_MEMVIEW_STRIDED | __Pyx_MEMVIEW_FOLLOW):
if pybuf.strides[i] <= 1:
raise ValueError("Dimension "+istr+" in axes specification is incompatible with buffer.")
if spec & __Pyx_MEMVIEW_DIRECT:
if has_suboffsets and pybuf.suboffsets[i] >= 0:
raise ValueError("Dimension "+istr+" in axes specification is incompatible with buffer.")
if spec & (__Pyx_MEMVIEW_PTR | __Pyx_MEMVIEW_FULL):
if not has_suboffsets:
raise ValueError("Buffer object does not provide suboffsets.")
if spec & __Pyx_MEMVIEW_PTR:
if pybuf.suboffsets[i] < 0:
raise ValueError("Buffer object suboffset in dimension "+istr+"must be >= 0.")
if is_f_contig:
idx = 0; stride = 1
for i in range(ndim):
if stride != pybuf.strides[i]:
raise ValueError("Buffer object not fortran contiguous.")
stride = stride * pybuf.shape[i]
elif is_c_contig:
idx = ndim-1; stride = 1
for i in range(ndim-1,-1,-1):
if stride != pybuf.strides[i]:
raise ValueError("Buffer object not C contiguous.")
stride = stride * pybuf.shape[i]
if DEBUG: print "pybuf.len", pybuf.len
for i in range(ndim):
memviewslice.diminfo[i].strides = pybuf.strides[i]
memviewslice.diminfo[i].shape = pybuf.shape[i]
if DEBUG: print 'pybuf.shape', pybuf.shape[i]
if DEBUG: print 'pybuf.strides', pybuf.strides[i]
if has_suboffsets:
if DEBUG: print 'pybuf.suboffsets', pybuf.suboffsets[i]
memviewslice.diminfo[i].suboffsets = pybuf.suboffsets[i]
__Pyx_INCREF(<object>memview)
__Pyx_GIVEREF(<object>memview)
memviewslice.memview = <__pyx_obj_memoryview*>memview
memviewslice.data = <char *>pybuf.buf
"""
%
Options
.
buffer_max_dims
,
name
=
"foobar"
,
prefix
=
"__pyx_viewaxis_"
)
cyarray_prefix
=
u'__pyx_cythonarray_'
cyarray_prefix
=
u'__pyx_cythonarray_'
cython_array_utility_code
=
CythonUtilityCode
(
u'''
cython_array_utility_code
=
CythonUtilityCode
(
u'''
...
...
Cython/Compiler/ExprNodes.py
View file @
8bda5665
...
@@ -7597,12 +7597,13 @@ class CoerceToMemViewSliceNode(CoercionNode):
...
@@ -7597,12 +7597,13 @@ class CoerceToMemViewSliceNode(CoercionNode):
self
.
is_temp
=
1
self
.
is_temp
=
1
def
generate_result_code
(
self
,
code
):
def
generate_result_code
(
self
,
code
):
import
MemoryView
import
MemoryView
,
Buffer
memviewobj
=
code
.
funcstate
.
allocate_temp
(
PyrexTypes
.
py_object_type
,
manage_ref
=
True
)
memviewobj
=
code
.
funcstate
.
allocate_temp
(
PyrexTypes
.
py_object_type
,
manage_ref
=
True
)
buf_flag
=
MemoryView
.
get_buf_flag
(
self
.
type
.
axes
)
buf_flag
=
MemoryView
.
get_buf_flag
(
self
.
type
.
axes
)
code
.
putln
(
"%s = (PyObject *)"
code
.
putln
(
"%s = (PyObject *)"
"__pyx_viewaxis_memoryview_cwrapper(%s, %s);"
%
\
"__pyx_viewaxis_memoryview_cwrapper(%s, %s);"
%
\
(
memviewobj
,
self
.
arg
.
py_result
(),
buf_flag
))
(
memviewobj
,
self
.
arg
.
py_result
(),
buf_flag
))
code
.
putln
(
code
.
error_goto_if_null
(
memviewobj
,
self
.
pos
))
ndim
=
len
(
self
.
type
.
axes
)
ndim
=
len
(
self
.
type
.
axes
)
spec_int_arr
=
code
.
funcstate
.
allocate_temp
(
spec_int_arr
=
code
.
funcstate
.
allocate_temp
(
PyrexTypes
.
c_array_type
(
PyrexTypes
.
c_int_type
,
ndim
),
PyrexTypes
.
c_array_type
(
PyrexTypes
.
c_int_type
,
ndim
),
...
@@ -7611,12 +7612,29 @@ class CoerceToMemViewSliceNode(CoercionNode):
...
@@ -7611,12 +7612,29 @@ class CoerceToMemViewSliceNode(CoercionNode):
for
idx
,
cspec
in
enumerate
(
specs_code
):
for
idx
,
cspec
in
enumerate
(
specs_code
):
code
.
putln
(
"%s[%d] = %s;"
%
(
spec_int_arr
,
idx
,
cspec
))
code
.
putln
(
"%s[%d] = %s;"
%
(
spec_int_arr
,
idx
,
cspec
))
itemsize
=
self
.
type
.
dtype
.
sign_and_name
()
itemsize
=
self
.
type
.
dtype
.
sign_and_name
()
format
=
MemoryView
.
format_from_type
(
self
.
type
.
dtype
)
code
.
globalstate
.
use_utility_code
(
Buffer
.
acquire_utility_code
)
code
.
globalstate
.
use_utility_code
(
MemoryView
.
memviewslice_init_code
)
dtype_typeinfo
=
Buffer
.
get_type_information_cname
(
code
,
self
.
type
.
dtype
)
MemoryView
.
put_init_entry
(
self
.
result
(),
code
)
MemoryView
.
put_init_entry
(
self
.
result
(),
code
)
code
.
putln
(
"__pyx_viewaxis_init_memviewslice_from_memview"
code
.
putln
(
"{"
)
"((struct __pyx_obj_memoryview *)%s, %s, %d, sizeof(%s),
\
"
%s
\
"
, &%s);"
%
\
code
.
putln
(
"__Pyx_BufFmt_StackElem __pyx_stack[%d];"
%
(
memviewobj
,
spec_int_arr
,
ndim
,
itemsize
,
format
,
self
.
result
()))
self
.
type
.
dtype
.
struct_nesting_depth
())
code
.
put_gotref
(
code
.
as_pyobject
(
"%s.memview"
%
self
.
result
(),
cython_memoryview_ptr_type
))
result
=
self
.
result
()
if
self
.
type
.
is_c_contig
:
c_or_f_flag
=
"__Pyx_IS_C_CONTIG"
elif
self
.
type
.
is_f_contig
:
c_or_f_flag
=
"__Pyx_IS_F_CONTIG"
else
:
c_or_f_flag
=
"0"
code
.
putln
(
code
.
error_goto_if
(
"-1 == __Pyx_ValidateAndInit_memviewslice("
"(struct __pyx_obj_memoryview *) %(memviewobj)s,"
" %(spec_int_arr)s, %(c_or_f_flag)s, %(ndim)d,"
" &%(dtype_typeinfo)s, __pyx_stack, &%(result)s)"
%
locals
(),
self
.
pos
))
code
.
putln
(
"}"
)
code
.
put_gotref
(
code
.
as_pyobject
(
"%s.memview"
%
self
.
result
(),
cython_memoryview_ptr_type
))
code
.
funcstate
.
release_temp
(
memviewobj
)
code
.
funcstate
.
release_temp
(
memviewobj
)
code
.
funcstate
.
release_temp
(
spec_int_arr
)
code
.
funcstate
.
release_temp
(
spec_int_arr
)
...
...
Cython/Compiler/MemoryView.py
View file @
8bda5665
...
@@ -434,3 +434,197 @@ typedef struct {
...
@@ -434,3 +434,197 @@ typedef struct {
Options
.
buffer_max_dims
,
Options
.
buffer_max_dims
,
memviewslice_cname
)
memviewslice_cname
)
)
)
memviewslice_init_code
=
UtilityCode
(
proto
=
"""
\
#define __Pyx_BUF_MAX_NDIMS %(BUF_MAX_NDIMS)d
#define __Pyx_MEMVIEW_DIRECT 1
#define __Pyx_MEMVIEW_PTR 2
#define __Pyx_MEMVIEW_FULL 4
#define __Pyx_MEMVIEW_CONTIG 8
#define __Pyx_MEMVIEW_STRIDED 16
#define __Pyx_MEMVIEW_FOLLOW 32
#define __Pyx_IS_C_CONTIG 1
#define __Pyx_IS_F_CONTIG 2
static int __Pyx_ValidateAndInit_memviewslice(struct __pyx_obj_memoryview *memview,
int *axes_specs, int c_or_f_flag, int ndim, __Pyx_TypeInfo *dtype,
__Pyx_BufFmt_StackElem stack[], __Pyx_memviewslice *memviewslice);
static int __Pyx_init_memviewslice(
struct __pyx_obj_memoryview *memview,
int ndim,
__Pyx_memviewslice *memviewslice);
"""
%
{
'BUF_MAX_NDIMS'
:
Options
.
buffer_max_dims
},
impl
=
"""
\
static int __Pyx_ValidateAndInit_memviewslice(
struct __pyx_obj_memoryview *memview,
int *axes_specs,
int c_or_f_flag,
int ndim,
__Pyx_TypeInfo *dtype,
__Pyx_BufFmt_StackElem stack[],
__Pyx_memviewslice *memviewslice) {
__Pyx_SetupRefcountContext("ValidateAndInit_memviewslice");
Py_buffer *buf = &memview->view;
int stride, i, spec = 0, retval = -1;
if (!buf) goto fail;
if(memviewslice->data || memviewslice->memview) {
PyErr_SetString(PyExc_ValueError,
"memoryviewslice struct must be initialized to NULL.");
goto fail;
}
if (buf->ndim != ndim) {
PyErr_Format(PyExc_ValueError,
"Buffer has wrong number of dimensions (expected %d, got %d)",
ndim, buf->ndim);
goto fail;
}
__Pyx_BufFmt_Context ctx;
__Pyx_BufFmt_Init(&ctx, stack, dtype);
if (!__Pyx_BufFmt_CheckString(&ctx, buf->format)) goto fail;
if ((unsigned)buf->itemsize != dtype->size) {
PyErr_Format(PyExc_ValueError,
"Item size of buffer (%"PY_FORMAT_SIZE_T"d byte%s) does not match size of '%s' (%"PY_FORMAT_SIZE_T"d byte%s)",
buf->itemsize, (buf->itemsize > 1) ? "s" : "",
dtype->name,
dtype->size, (dtype->size > 1) ? "s" : "");
goto fail;
}
if (!buf->strides) {
PyErr_SetString(PyExc_ValueError,
"buffer does not supply strides necessary for memoryview.");
goto fail;
}
for(i=0; i<ndim; i++) {
spec = axes_specs[i];
if (spec & __Pyx_MEMVIEW_CONTIG) {
if (buf->strides[i] != buf->itemsize) {
PyErr_SetString(PyExc_ValueError,
"Buffer and memoryview are not contiguous in the same dimension.");
goto fail;
}
}
if (spec & (__Pyx_MEMVIEW_STRIDED | __Pyx_MEMVIEW_FOLLOW)) {
if (buf->strides[i] <= buf->itemsize) {
PyErr_SetString(PyExc_ValueError,
"Buffer and memoryview are not contiguous in the same dimension.");
goto fail;
}
}
if (spec & __Pyx_MEMVIEW_DIRECT) {
if (buf->suboffsets && buf->suboffsets[i] >= 0) {
PyErr_SetString(PyExc_ValueError,
"Buffer not compatible with direct access.");
goto fail;
}
}
if (spec & (__Pyx_MEMVIEW_PTR | __Pyx_MEMVIEW_FULL)) {
if (!buf->suboffsets) {
PyErr_SetString(PyExc_ValueError,
"Buffer not able to be indirectly accessed.");
goto fail;
}
}
if (spec & __Pyx_MEMVIEW_PTR) {
if (buf->suboffsets[i] < 0) {
PyErr_Format(PyExc_ValueError,
"Buffer not indirectly accessed in %d dimension, although memoryview is.", i);
goto fail;
}
}
}
if (c_or_f_flag & __Pyx_IS_F_CONTIG) {
stride = 1;
for(i=0; i<ndim; i++) {
if(stride * buf->itemsize != buf->strides[i]) {
PyErr_SetString(PyExc_ValueError,
"Buffer not fortran contiguous.");
goto fail;
}
stride = stride * buf->shape[i];
}
} else if (c_or_f_flag & __Pyx_IS_F_CONTIG) {
for(i=ndim-1; i>-1; i--) {
if(stride * buf->itemsize != buf->strides[i]) {
PyErr_SetString(PyExc_ValueError,
"Buffer not C contiguous.");
goto fail;
}
stride = stride * buf->shape[i];
}
}
if(unlikely(__Pyx_init_memviewslice(memview, ndim, memviewslice) == -1)) {
goto fail;
}
retval = 0;
goto no_fail;
fail:
__Pyx_XDECREF(memviewslice->memview);
memviewslice->memview = 0;
memviewslice->data = 0;
retval = -1;
no_fail:
__Pyx_FinishRefcountContext();
return retval;
}
static int __Pyx_init_memviewslice(
struct __pyx_obj_memoryview *memview,
int ndim,
__Pyx_memviewslice *memviewslice) {
__Pyx_SetupRefcountContext("init_memviewslice");
int i, retval=-1;
Py_buffer *buf = &memview->view;
if(!buf || memviewslice->memview || memviewslice->data) {
goto fail;
}
for(i=0; i<ndim; i++) {
memviewslice->diminfo[i].strides = buf->strides[i];
memviewslice->diminfo[i].shape = buf->shape[i];
if(buf->suboffsets) {
memviewslice->diminfo[i].suboffsets = buf->suboffsets[i];
}
}
__Pyx_INCREF((PyObject *)memview);
__Pyx_GIVEREF((PyObject *)memview);
memviewslice->memview = memview;
memviewslice->data = (char *)buf->buf;
retval = 0;
goto no_fail;
fail:
__Pyx_XDECREF(memviewslice->memview);
memviewslice->memview = 0;
memviewslice->data = 0;
retval = -1;
no_fail:
__Pyx_FinishRefcountContext();
return retval;
}
"""
)
memviewslice_init_code
.
requires
=
[
memviewslice_declare_code
]
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