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Xavier Thompson
cython
Commits
917cce5e
Commit
917cce5e
authored
Aug 04, 2011
by
Mark Florisson
Browse files
Options
Browse Files
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Email Patches
Plain Diff
Support casting pointers to cython.array
parent
d7322d2f
Changes
16
Expand all
Show whitespace changes
Inline
Side-by-side
Showing
16 changed files
with
608 additions
and
210 deletions
+608
-210
Cython/Compiler/Buffer.py
Cython/Compiler/Buffer.py
+22
-7
Cython/Compiler/Code.py
Cython/Compiler/Code.py
+6
-1
Cython/Compiler/CythonScope.py
Cython/Compiler/CythonScope.py
+10
-17
Cython/Compiler/ExprNodes.py
Cython/Compiler/ExprNodes.py
+161
-0
Cython/Compiler/MemoryView.py
Cython/Compiler/MemoryView.py
+27
-14
Cython/Compiler/ModuleNode.py
Cython/Compiler/ModuleNode.py
+2
-1
Cython/Compiler/Nodes.py
Cython/Compiler/Nodes.py
+16
-4
Cython/Compiler/Parsing.py
Cython/Compiler/Parsing.py
+6
-1
Cython/Compiler/PyrexTypes.py
Cython/Compiler/PyrexTypes.py
+5
-4
Cython/Compiler/Symtab.py
Cython/Compiler/Symtab.py
+9
-10
Cython/Compiler/UtilityCode.py
Cython/Compiler/UtilityCode.py
+7
-8
Cython/Utility/Buffer.c
Cython/Utility/Buffer.c
+74
-12
Cython/Utility/MemoryView.pyx
Cython/Utility/MemoryView.pyx
+181
-77
Cython/Utility/MemoryView_C.c
Cython/Utility/MemoryView_C.c
+12
-10
tests/run/cythonarray.pyx
tests/run/cythonarray.pyx
+70
-8
tests/run/memoryview.pyx
tests/run/memoryview.pyx
+0
-36
No files found.
Cython/Compiler/Buffer.py
View file @
917cce5e
...
...
@@ -5,7 +5,7 @@ from ExprNodes import *
from
StringEncoding
import
EncodedString
from
Errors
import
CompileError
from
UtilityCode
import
CythonUtilityCode
from
Code
import
UtilityCode
from
Code
import
UtilityCode
,
ContentHashingUtilityCode
import
Cython.Compiler.Options
import
Interpreter
import
PyrexTypes
...
...
@@ -34,10 +34,11 @@ class IntroduceBufferAuxiliaryVars(CythonTransform):
assert
isinstance
(
node
,
ModuleNode
)
self
.
max_ndim
=
0
result
=
super
(
IntroduceBufferAuxiliaryVars
,
self
).
__call__
(
node
)
if
self
.
buffers_exists
or
self
.
using_memoryview
:
if
self
.
buffers_exists
:
use_bufstruct_declare_code
(
node
.
scope
)
use_py2_buffer_functions
(
node
.
scope
)
use_empty_bufstruct_code
(
node
.
scope
,
self
.
max_ndim
)
node
.
scope
.
use_utility_code
(
empty_bufstruct_utility
)
return
result
...
...
@@ -476,13 +477,15 @@ def put_buffer_lookup_code(entry, index_signeds, index_cnames, directives,
def
use_bufstruct_declare_code
(
env
):
env
.
use_utility_code
(
buffer_struct_declare_code
)
def
use_empty_bufstruct_code
(
env
,
max_ndim
):
def
get_empty_bufstruct_code
(
max_ndim
):
code
=
dedent
(
"""
Py_ssize_t __Pyx_zeros[] = {%s};
Py_ssize_t __Pyx_minusones[] = {%s};
"""
)
%
(
", "
.
join
([
"0"
]
*
max_ndim
),
", "
.
join
([
"-1"
]
*
max_ndim
))
env
.
use_utility_code
(
UtilityCode
(
proto
=
code
)
)
return
UtilityCode
(
proto
=
code
)
empty_bufstruct_utility
=
get_empty_bufstruct_code
(
Options
.
buffer_max_dims
)
def
buf_lookup_full_code
(
proto
,
defin
,
name
,
nd
):
"""
...
...
@@ -725,12 +728,18 @@ def get_type_information_cname(code, dtype, maxdepth=None):
print
dtype
assert
False
typecode
.
putln
((
'static __Pyx_TypeInfo %s = { "%s", %s, sizeof(%s),
\
'
%s
\
'
};'
if
dtype
.
is_int
:
is_unsigned
=
"IS_UNSIGNED(%s)"
%
declcode
else
:
is_unsigned
=
"0"
typecode
.
putln
((
'static __Pyx_TypeInfo %s = { "%s", %s, sizeof(%s),
\
'
%s
\
'
, %s };'
)
%
(
name
,
rep
,
structinfo_name
,
declcode
,
typegroup
,
is_unsigned
,
),
safe
=
True
)
return
name
...
...
@@ -753,5 +762,11 @@ impl = """
"""
)
raise_buffer_fallback_code
=
load_buffer_utility
(
"BufferFallbackError"
)
buffer_structs_code
=
load_buffer_utility
(
"BufferFormatStructs"
)
acquire_utility_code
=
load_buffer_utility
(
"BufferFormatCheck"
,
context
=
context
)
\ No newline at end of file
context
=
context
,
requires
=
[
buffer_structs_code
])
# See utility code BufferFormatFromTypeInfo
_typeinfo_to_format_code
=
load_buffer_utility
(
"TypeInfoToFormat"
,
context
=
{},
requires
=
[
buffer_structs_code
])
\ No newline at end of file
Cython/Compiler/Code.py
View file @
917cce5e
...
...
@@ -318,7 +318,12 @@ class ContentHashingUtilityCode(UtilityCode):
return
hash
((
self
.
proto
,
self
.
impl
))
def
__eq__
(
self
,
other
):
return
(
self
.
proto
,
self
.
impl
)
==
(
other
.
proto
,
other
.
impl
)
if
not
isinstance
(
other
,
type
(
self
)):
return
False
self_proto
=
getattr
(
self
,
'proto'
,
None
)
other_proto
=
getattr
(
other
,
'proto'
,
None
)
return
(
self_proto
,
self
.
impl
)
==
(
other_proto
,
other
.
impl
)
class
LazyUtilityCode
(
UtilityCodeBase
):
...
...
Cython/Compiler/CythonScope.py
View file @
917cce5e
...
...
@@ -71,12 +71,14 @@ class CythonScope(ModuleScope):
# self.test_cythonscope()
def
test_cythonscope
(
self
):
# A special function just to make it easy to test the scope and
# utility code functionality in isolation. It is available to
# "end-users" but nobody will know it is there anyway...
"""
Creates some entries for testing purposes and entries for
cython.array() and for cython.view.*.
"""
cython_testscope_utility_code
.
declare_in_scope
(
self
)
cython_test_extclass_utility_code
.
declare_in_scope
(
self
)
cython_array_utility_code
.
declare_in_scope
(
self
)
MemoryView
.
cython_array_utility_code
.
declare_in_scope
(
self
)
#
# The view sub-scope
...
...
@@ -92,7 +94,9 @@ class CythonScope(ModuleScope):
cythonview_testscope_utility_code
.
declare_in_scope
(
viewscope
)
view_utility_code
.
declare_in_scope
(
viewscope
)
view_utility_scope
=
MemoryView
.
view_utility_code
.
declare_in_scope
(
viewscope
)
MemoryView
.
memview_fromslice_utility_code
.
from_scope
=
view_utility_scope
MemoryView
.
memview_fromslice_utility_code
.
declare_in_scope
(
viewscope
)
def
create_cython_scope
(
context
,
create_testscope
):
...
...
@@ -133,14 +137,3 @@ cython_test_extclass_utility_code = \
test_cython_utility_dep
])
cythonview_testscope_utility_code
=
load_testscope_utility
(
"View.TestScope"
)
\ No newline at end of file
view_utility_code
=
MemoryView
.
load_memview_cy_utility
(
"View.MemoryView"
,
context
=
MemoryView
.
context
,
requires
=
[
Buffer
.
GetAndReleaseBufferUtilityCode
(),
MemoryView
.
memviewslice_declare_code
],
)
cython_array_utility_code
=
MemoryView
.
load_memview_cy_utility
(
"CythonArray"
,
context
=
MemoryView
.
context
,
requires
=
[
view_utility_code
])
Cython/Compiler/ExprNodes.py
View file @
917cce5e
...
...
@@ -584,6 +584,11 @@ class ExprNode(Node):
if
dst_type
.
is_reference
:
dst_type
=
dst_type
.
ref_base_type
if
self
.
coercion_type
is
not
None
:
# This is purely for error checking purposes!
node
=
NameNode
(
self
.
pos
,
name
=
''
,
type
=
self
.
coercion_type
)
node
.
coerce_to
(
dst_type
,
env
)
if
dst_type
.
is_memoryviewslice
:
import
MemoryView
if
not
src
.
type
.
is_memoryviewslice
:
...
...
@@ -747,6 +752,7 @@ class PyConstNode(AtomicExprNode):
class
NoneNode
(
PyConstNode
):
# The constant value None
is_none
=
1
value
=
"Py_None"
constant_result
=
None
...
...
@@ -6051,6 +6057,157 @@ class TypecastNode(ExprNode):
code
.
put_incref
(
self
.
result
(),
self
.
ctype
())
ERR_START
=
"Start may not be given"
ERR_NOT_STOP
=
"Stop must be provided to indicate shape"
ERR_STEPS
=
(
"Strides may only be given to indicate contiguity. "
"Consider slicing it after conversion"
)
ERR_NOT_POINTER
=
"Can only create cython.array from pointer"
ERR_BASE_TYPE
=
"Pointer base type does not match cython.array base type"
class
CythonArrayNode
(
ExprNode
):
"""
Used when a pointer of base_type is cast to a memoryviewslice with that
base type. i.e.
<int[::1, :]> p
creates a fortran-contiguous cython.array.
We leave the type set to object so coercions to object are more efficient
and less work. Acquiring a memoryviewslice from this will be just as
efficient. ExprNode.coerce_to() will do the additional typecheck on
self.compile_time_type
"""
subexprs
=
[
'operand'
,
'shapes'
]
shapes
=
None
is_temp
=
True
mode
=
"c"
shape_type
=
PyrexTypes
.
c_py_ssize_t_type
def
analyse_types
(
self
,
env
):
import
MemoryView
self
.
type
=
error_type
self
.
env
=
env
self
.
shapes
=
[]
for
axis_no
,
axis
in
enumerate
(
self
.
base_type_node
.
axes
):
if
not
axis
.
start
.
is_none
:
return
error
(
axis
.
start
.
pos
,
ERR_START
)
if
axis
.
stop
.
is_none
:
return
error
(
axis
.
pos
,
ERR_NOT_STOP
)
axis
.
stop
.
analyse_types
(
env
)
shape
=
axis
.
stop
.
coerce_to
(
self
.
shape_type
,
env
)
if
not
shape
.
is_literal
:
shape
.
coerce_to_temp
(
env
)
self
.
shapes
.
append
(
shape
)
if
not
axis
.
stop
.
type
.
is_int
:
return
error
(
axis
.
stop
.
pos
,
"Expected an integer type"
)
first_or_last
=
axis_no
in
(
0
,
len
(
self
.
base_type_node
.
axes
)
-
1
)
if
not
axis
.
step
.
is_none
and
first_or_last
:
axis
.
step
.
analyse_types
(
env
)
if
(
not
axis
.
step
.
type
.
is_int
and
axis
.
step
.
is_literal
and
not
axis
.
step
.
type
.
is_error
):
return
error
(
axis
.
step
.
pos
,
"Expected an integer literal"
)
if
axis
.
step
.
compile_time_value
(
env
)
!=
1
:
return
error
(
axis
.
step
.
pos
,
ERR_STEPS
)
if
axis_no
==
0
:
self
.
mode
=
"fortran"
elif
axis
.
step
and
not
first_or_last
:
return
error
(
axis
.
step
.
pos
,
ERR_STEPS
)
self
.
operand
.
analyse_types
(
env
)
array_dtype
=
self
.
base_type_node
.
base_type_node
.
analyse
(
env
)
if
not
self
.
operand
.
type
.
is_ptr
:
return
error
(
self
.
operand
.
pos
,
ERR_NOT_POINTER
)
elif
not
self
.
operand
.
type
.
base_type
.
same_as
(
array_dtype
):
return
error
(
self
.
operand
.
pos
,
ERR_BASE_TYPE
)
#self.operand = self.operand.coerce_to(PyrexTypes.c_char_ptr_type, env)
if
not
self
.
operand
.
is_name
:
self
.
operand
=
self
.
operand
.
coerce_to_temp
(
env
)
axes
=
[(
'direct'
,
'follow'
)]
*
len
(
self
.
base_type_node
.
axes
)
if
self
.
mode
==
"fortran"
:
axes
[
0
]
=
(
'direct'
,
'contig'
)
else
:
axes
[
-
1
]
=
(
'direct'
,
'contig'
)
self
.
coercion_type
=
PyrexTypes
.
MemoryViewSliceType
(
array_dtype
,
axes
)
#self.type = py_object_type
self
.
type
=
env
.
global_scope
().
context
.
cython_scope
.
lookup
(
"array"
).
type
assert
self
.
type
env
.
use_utility_code
(
MemoryView
.
cython_array_utility_code
)
env
.
use_utility_code
(
MemoryView
.
typeinfo_to_format_code
)
def
allocate_temp_result
(
self
,
code
):
if
self
.
temp_code
:
raise
RuntimeError
(
"temp allocated mulitple times"
)
self
.
temp_code
=
code
.
funcstate
.
allocate_temp
(
self
.
type
,
True
)
def
generate_result_code
(
self
,
code
):
import
Buffer
shapes
=
[
self
.
shape_type
.
cast_code
(
shape
.
result
())
for
shape
in
self
.
shapes
]
dtype
=
self
.
coercion_type
.
dtype
shapes_temp
=
code
.
funcstate
.
allocate_temp
(
py_object_type
,
True
)
format_temp
=
code
.
funcstate
.
allocate_temp
(
py_object_type
,
True
)
itemsize
=
"sizeof(%s)"
%
dtype
.
declaration_code
(
""
)
type_info
=
Buffer
.
get_type_information_cname
(
code
,
dtype
)
code
.
putln
(
"if (!%s) {"
%
self
.
operand
.
result
())
code
.
putln
(
'PyErr_SetString(PyExc_ValueError,'
'"Cannot create cython.array from NULL pointer");'
)
code
.
putln
(
code
.
error_goto
(
self
.
operand
.
pos
))
code
.
putln
(
"}"
)
code
.
putln
(
"%s = __pyx_format_from_typeinfo(&%s);"
%
(
format_temp
,
type_info
))
code
.
putln
(
'%s = Py_BuildValue("(%s)", %s);'
%
(
shapes_temp
,
"n"
*
len
(
shapes
),
", "
.
join
(
shapes
)))
err
=
"!%s || !%s || !PyBytes_Check(%s)"
%
(
format_temp
,
shapes_temp
,
format_temp
)
code
.
putln
(
code
.
error_goto_if
(
err
,
self
.
pos
))
code
.
put_gotref
(
format_temp
)
code
.
put_gotref
(
shapes_temp
)
tup
=
(
self
.
result
(),
shapes_temp
,
itemsize
,
format_temp
,
self
.
mode
,
self
.
operand
.
result
())
code
.
putln
(
'%s = __pyx_array_new('
'%s, %s, PyBytes_AS_STRING(%s), '
'"%s", (char *) %s);'
%
tup
)
code
.
putln
(
code
.
error_goto_if_null
(
self
.
result
(),
self
.
pos
))
code
.
put_gotref
(
self
.
result
())
def
dispose
(
temp
):
code
.
put_decref_clear
(
temp
,
py_object_type
)
code
.
funcstate
.
release_temp
(
temp
)
dispose
(
shapes_temp
)
dispose
(
format_temp
)
class
SizeofNode
(
ExprNode
):
# Abstract base class for sizeof(x) expression nodes.
...
...
@@ -7910,6 +8067,10 @@ class CoerceToPyTypeNode(CoercionNode):
# FIXME: check that the target type and the resulting type are compatible
pass
if
arg
.
type
.
is_memoryviewslice
:
# Register utility codes at this point
arg
.
type
.
get_to_py_function
(
env
,
arg
)
self
.
env
=
env
gil_message
=
"Converting to Python object"
...
...
Cython/Compiler/MemoryView.py
View file @
917cce5e
...
...
@@ -66,8 +66,6 @@ memview_typeptr_cname = '__pyx_memoryview_type'
memview_objstruct_cname
=
'__pyx_memoryview_obj'
memviewslice_cname
=
u'__Pyx_memviewslice'
def
put_init_entry
(
mv_cname
,
code
):
code
.
putln
(
"%s.data = NULL;"
%
mv_cname
)
code
.
putln
(
"%s.memview = NULL;"
%
mv_cname
)
...
...
@@ -129,18 +127,9 @@ def get_buf_flags(specs):
else
:
return
memview_strided_access
def
use_memview_util_code
(
env
):
import
CythonScope
env
.
use_utility_code
(
CythonScope
.
view_utility_code
)
env
.
use_utility_code
(
memviewslice_declare_code
)
def
use_memview_cwrap
(
env
):
import
CythonScope
env
.
use_utility_code
(
CythonScope
.
view_utility_code
)
def
use_cython_array
(
env
):
import
CythonScope
env
.
use_utility_code
(
CythonScope
.
cython_array_utility_code
)
env
.
use_utility_code
(
cython_array_utility_code
)
def
src_conforms_to_dst
(
src
,
dst
):
'''
...
...
@@ -778,7 +767,31 @@ memviewslice_declare_code = load_memview_c_utility(
memviewslice_init_code
=
load_memview_c_utility
(
"MemviewSliceInit"
,
context
=
dict
(
context
,
BUF_MAX_NDIMS
=
Options
.
buffer_max_dims
),
requires
=
[
memviewslice_declare_code
,
Buffer
.
acquire_utility_code
],
requires
=
[
memviewslice_declare_code
,
Buffer
.
acquire_utility_code
],
)
memviewslice_index_helpers
=
load_memview_c_utility
(
"MemviewSliceIndex"
)
typeinfo_to_format_code
=
load_memview_cy_utility
(
"BufferFormatFromTypeInfo"
,
requires
=
[
Buffer
.
_typeinfo_to_format_code
])
view_utility_code
=
load_memview_cy_utility
(
"View.MemoryView"
,
context
=
context
,
requires
=
[
Buffer
.
GetAndReleaseBufferUtilityCode
(),
Buffer
.
buffer_struct_declare_code
,
Buffer
.
empty_bufstruct_utility
,
memviewslice_init_code
],
)
cython_array_utility_code
=
load_memview_cy_utility
(
"CythonArray"
,
context
=
context
,
requires
=
[
view_utility_code
])
memview_fromslice_utility_code
=
load_memview_cy_utility
(
"MemviewFromSlice"
,
context
=
context
,
requires
=
[
view_utility_code
],
)
\ No newline at end of file
Cython/Compiler/ModuleNode.py
View file @
917cce5e
...
...
@@ -2440,8 +2440,9 @@ class ModuleNode(Nodes.Node, Nodes.BlockNode):
type
.
typeptr_cname
,
type
.
typeobj_cname
))
def
generate_cfunction_declaration
(
entry
,
env
,
code
,
definition
):
from_cy_utility
=
entry
.
used
and
entry
.
utility_code_definition
if
entry
.
inline_func_in_pxd
or
(
not
entry
.
in_cinclude
and
(
definition
or
entry
.
defined_in_pxd
or
entry
.
visibility
==
'extern'
)):
or
entry
.
defined_in_pxd
or
entry
.
visibility
==
'extern'
or
from_cy_utility
)):
if
entry
.
visibility
==
'extern'
:
storage_class
=
"%s "
%
Naming
.
extern_c_macro
dll_linkage
=
"DL_IMPORT"
...
...
Cython/Compiler/Nodes.py
View file @
917cce5e
...
...
@@ -126,6 +126,7 @@ class Node(object):
__metaclass__
=
VerboseCodeWriter
is_name
=
0
is_none
=
0
is_literal
=
0
is_terminator
=
0
temps
=
None
...
...
@@ -137,6 +138,11 @@ class Node(object):
cf_state
=
None
# This may be an additional (or 'actual') type that will be checked when
# this node is coerced to another type. This could be useful to set when
# the actual type to which it can coerce is known, but you want to leave
# the type a py_object_type
coercion_type
=
None
def
__init__
(
self
,
pos
,
**
kw
):
self
.
pos
=
pos
...
...
@@ -823,12 +829,18 @@ class MemoryViewSliceTypeNode(CBaseTypeNode):
return
self
.
type
self
.
type
=
PyrexTypes
.
MemoryViewSliceType
(
base_type
,
axes_specs
)
MemoryView
.
use_memview_util_code
(
env
)
MemoryView
.
use_cython_array
(
env
)
MemoryView
.
use_memview_util_code
(
env
)
env
.
use_utility_code
(
MemoryView
.
memviewslice_declare_code
)
if
self
.
type
.
dtype
.
is_memoryviewslice
:
error
(
self
.
pos
,
"Memoryview slices may not be used as the "
"base type for memoryview slices"
)
self
.
use_memview_utilities
(
env
)
return
self
.
type
def
use_memview_utilities
(
self
,
env
):
import
MemoryView
env
.
use_utility_code
(
MemoryView
.
view_utility_code
)
class
CNestedBaseTypeNode
(
CBaseTypeNode
):
# For C++ classes that live inside other C++ classes.
...
...
Cython/Compiler/Parsing.py
View file @
917cce5e
...
...
@@ -297,7 +297,8 @@ def p_typecast(s):
pos
=
s
.
position
()
s
.
next
()
base_type
=
p_c_base_type
(
s
)
if
base_type
.
name
is
None
:
is_memslice
=
isinstance
(
base_type
,
Nodes
.
MemoryViewSliceTypeNode
)
if
not
is_memslice
and
base_type
.
name
is
None
:
s
.
error
(
"Unknown type"
)
declarator
=
p_c_declarator
(
s
,
empty
=
1
)
if
s
.
sy
==
'?'
:
...
...
@@ -307,6 +308,10 @@ def p_typecast(s):
typecheck
=
0
s
.
expect
(
">"
)
operand
=
p_factor
(
s
)
if
is_memslice
:
return
ExprNodes
.
CythonArrayNode
(
pos
,
base_type_node
=
base_type
,
operand
=
operand
)
return
ExprNodes
.
TypecastNode
(
pos
,
base_type
=
base_type
,
declarator
=
declarator
,
...
...
Cython/Compiler/PyrexTypes.py
View file @
917cce5e
...
...
@@ -553,14 +553,15 @@ class MemoryViewSliceType(PyrexType):
return
True
def
get_to_py_function
(
self
,
env
,
obj
):
import
MemoryView
env
.
use_utility_code
(
MemoryView
.
memview_fromslice_utility_code
)
to_py_func
,
from_py_func
=
self
.
dtype_object_conversion_funcs
(
env
)
to_py_func
=
"(PyObject *(*)(char *)) "
+
to_py_func
from_py_func
=
"(int (*)(char *, PyObject *)) "
+
from_py_func
tup
=
(
obj
.
result
(),
obj
.
result
(),
self
.
flags
,
self
.
ndim
,
to_py_func
,
from_py_func
)
return
(
"__pyx_memoryview_fromslice(&%s, %s.memview->obj, "
"%s, %s, %s, %s);"
%
tup
)
tup
=
(
obj
.
result
(),
self
.
ndim
,
to_py_func
,
from_py_func
)
return
"__pyx_memoryview_fromslice(&%s, %s, %s, %s);"
%
tup
def
dtype_object_conversion_funcs
(
self
,
env
):
import
MemoryView
,
Code
...
...
Cython/Compiler/Symtab.py
View file @
917cce5e
...
...
@@ -291,8 +291,6 @@ class Scope(object):
entries = [(name, entry)
for name, entry in other.entries.iteritems()
if entry.used or merge_unused]
# !@#$ py23
entries = dict(entries)
self.entries.update(entries)
...
...
@@ -305,8 +303,9 @@ class Scope(object):
'cfunc_entries',
'c_class_entries'):
self_entries = getattr(self, attr)
names = set([e.name for e in self_entries])
for entry in getattr(other, attr):
if
entry.used or merge_unused
:
if
(entry.used or merge_unused) and entry.name not in names
:
self_entries.append(entry)
def __str__(self):
...
...
Cython/Compiler/UtilityCode.py
View file @
917cce5e
...
...
@@ -115,8 +115,8 @@ class CythonUtilityCode(Code.UtilityCodeBase):
return
module_node
transform
=
ParseTreeTransforms
.
AnalyseDeclarationsTransform
pipeline
=
Pipeline
.
insert_into_pipeline
(
pipeline
,
transform
,
before
=
scope_
transform
)
pipeline
=
Pipeline
.
insert_into_pipeline
(
pipeline
,
scope_
transform
,
before
=
transform
)
(
err
,
tree
)
=
Pipeline
.
run_pipeline
(
pipeline
,
tree
)
assert
not
err
,
err
...
...
@@ -125,7 +125,7 @@ class CythonUtilityCode(Code.UtilityCodeBase):
def
put_code
(
self
,
output
):
pass
def
declare_in_scope
(
self
,
dest_scope
,
used
=
False
,
modname
=
None
):
def
declare_in_scope
(
self
,
dest_scope
,
used
=
False
):
"""
Declare all entries from the utility code in dest_scope. Code will only
be included for used entries. If module_name is given, declare the
...
...
@@ -143,13 +143,12 @@ class CythonUtilityCode(Code.UtilityCodeBase):
entry
.
utility_code_definition
=
self
entry
.
used
=
used
if
modname
and
entry
.
type
.
is_extension_type
:
entry
.
qualified_name
=
modname
entry
.
type
.
module_name
=
modname
dest_scope
.
merge_in
(
tree
.
scope
,
merge_unused
=
True
)
original_scope
=
tree
.
scope
dest_scope
.
merge_in
(
original_scope
,
merge_unused
=
True
)
tree
.
scope
=
dest_scope
for
dep
in
self
.
requires
:
if
dep
.
is_cython_utility
:
dep
.
declare_in_scope
(
dest_scope
)
return
original_scope
Cython/Utility/Buffer.c
View file @
917cce5e
...
...
@@ -35,19 +35,9 @@ static void __Pyx_RaiseBufferFallbackError(void) {
"Buffer acquisition failed on assignment; and then reacquiring the old buffer failed too!"
);
}
/////////////// BufferFormatCheck.proto ///////////////
{{
#
Buffer
format
string
checking
Buffer
type
checking
.
Utility
code
for
checking
that
acquired
buffers
match
our
assumptions
.
We
only
need
to
check
ndim
and
the
format
string
;
the
access
mode
/
flags
is
checked
by
the
exporter
.
The
alignment
code
is
copied
from
_struct
.
c
in
Python
.
}}
/////////////// BufferFormatStructs.proto ///////////////
#define IS_UNSIGNED(type) (((type) -1) > 0)
/* Run-time type information about structs used with buffers */
struct
__Pyx_StructField_
;
...
...
@@ -57,6 +47,7 @@ typedef struct {
struct
__Pyx_StructField_
*
fields
;
size_t
size
;
/* sizeof(type) */
char
typegroup
;
/* _R_eal, _C_omplex, Signed _I_nt, _U_nsigned int, _S_truct, _P_ointer, _O_bject */
char
is_unsigned
;
}
__Pyx_TypeInfo
;
typedef
struct
__Pyx_StructField_
{
...
...
@@ -82,6 +73,19 @@ typedef struct {
}
__Pyx_BufFmt_Context
;
/////////////// BufferFormatCheck.proto ///////////////
{{
#
Buffer
format
string
checking
Buffer
type
checking
.
Utility
code
for
checking
that
acquired
buffers
match
our
assumptions
.
We
only
need
to
check
ndim
and
the
format
string
;
the
access
mode
/
flags
is
checked
by
the
exporter
.
The
alignment
code
is
copied
from
_struct
.
c
in
Python
.
}}
static
CYTHON_INLINE
int
__Pyx_GetBufferAndValidate
(
Py_buffer
*
buf
,
PyObject
*
obj
,
__Pyx_TypeInfo
*
dtype
,
int
flags
,
int
nd
,
int
cast
,
__Pyx_BufFmt_StackElem
*
stack
);
static
CYTHON_INLINE
void
__Pyx_SafeReleaseBuffer
(
Py_buffer
*
info
);
...
...
@@ -246,6 +250,7 @@ static char __Pyx_BufFmt_TypeCharToGroup(char ch, int is_complex) {
}
}
static
void
__Pyx_BufFmt_RaiseExpected
(
__Pyx_BufFmt_Context
*
ctx
)
{
if
(
ctx
->
head
==
NULL
||
ctx
->
head
->
field
==
&
ctx
->
root
)
{
const
char
*
expected
;
...
...
@@ -519,3 +524,60 @@ static CYTHON_INLINE void __Pyx_SafeReleaseBuffer(Py_buffer* info) {
if
(
info
->
suboffsets
==
__Pyx_minusones
)
info
->
suboffsets
=
NULL
;
__Pyx_ReleaseBuffer
(
info
);
}
/////////////// TypeInfoToFormat.proto ///////////////
struct
__pyx_typeinfo_string
{
char
string
[
3
];
};
static
struct
__pyx_typeinfo_string
__Pyx_TypeInfoToFormat
(
__Pyx_TypeInfo
*
type
);
/////////////// TypeInfoToFormat ///////////////
{{
#
See
also
MemoryView
.
pyx
:
BufferFormatFromTypeInfo
}}
static
struct
__pyx_typeinfo_string
__Pyx_TypeInfoToFormat
(
__Pyx_TypeInfo
*
type
)
{
struct
__pyx_typeinfo_string
result
=
{
{
0
}
};
char
*
buf
=
(
char
*
)
result
.
string
;
size_t
size
=
type
->
size
;
switch
(
type
->
typegroup
)
{
case
'I'
:
case
'U'
:
if
(
size
==
1
)
*
buf
=
'c'
;
else
if
(
size
==
2
)
*
buf
=
'h'
;
else
if
(
size
==
4
)
*
buf
=
'i'
;
else
if
(
size
==
8
)
*
buf
=
'q'
;
if
(
type
->
is_unsigned
)
*
buf
=
toupper
(
*
buf
);
break
;
case
'P'
:
*
buf
=
'P'
;
break
;
case
'C'
:
{
__Pyx_TypeInfo
complex_type
=
*
type
;
complex_type
.
typegroup
=
'R'
;
complex_type
.
size
/=
2
;
*
buf
++
=
'Z'
;
/* Note: What about short/int/long complex? Probably not used? */
*
buf
=
__Pyx_TypeInfoToFormat
(
&
complex_type
).
string
[
0
];
break
;
}
case
'R'
:
if
(
size
==
4
)
*
buf
=
'f'
;
else
if
(
size
==
8
)
*
buf
=
'd'
;
else
*
buf
=
'g'
;
break
;
}
return
result
;
}
Cython/Utility/MemoryView.pyx
View file @
917cce5e
This diff is collapsed.
Click to expand it.
Cython/Utility/MemoryView_C.c
View file @
917cce5e
...
...
@@ -56,9 +56,8 @@ static CYTHON_INLINE char *__pyx_memviewslice_index_full(const char *bufp, Py_ss
{{
#
__Pyx_PyObject_to_MemoryviewSlice_
<
count
>
}}
static
CYTHON_INLINE
{{
memviewslice_name
}}
{{
funcname
}}(
PyObject
*
obj
)
{
{{
memviewslice_name
}}
result
;
result
.
memview
=
NULL
;
result
.
data
=
NULL
;
{{
memviewslice_name
}}
result
=
{
0
};
struct
__pyx_memoryview_obj
*
memview
=
\
(
struct
__pyx_memoryview_obj
*
)
__pyx_memoryview_new
(
obj
,
{{
buf_flag
}});
__Pyx_BufFmt_StackElem
stack
[{{
struct_nesting_depth
}}];
...
...
@@ -294,9 +293,9 @@ static CYTHON_INLINE void __Pyx_INC_MEMVIEW({{memviewslice_name}} *memslice,
__pyx_fatalerror
(
"Acquisition count is %d (line %d)"
,
memview
->
acquisition_count
,
lineno
);
//
PyThread_acquire_lock(memview->lock, 1);
PyThread_acquire_lock
(
memview
->
lock
,
1
);
first_time
=
(
memview
->
acquisition_count
++
==
0
);
//
PyThread_release_lock(memview->lock);
PyThread_release_lock
(
memview
->
lock
);
if
(
first_time
)
{
if
(
have_gil
)
{
...
...
@@ -321,9 +320,9 @@ static CYTHON_INLINE void __Pyx_XDEC_MEMVIEW({{memviewslice_name}} *memslice,
__pyx_fatalerror
(
"Acquisition count is %d (line %d)"
,
memview
->
acquisition_count
,
lineno
);
//
PyThread_acquire_lock(memview->lock, 1);
PyThread_acquire_lock
(
memview
->
lock
,
1
);
last_time
=
(
memview
->
acquisition_count
--
==
1
);
//
PyThread_release_lock(memview->lock);
PyThread_release_lock
(
memview
->
lock
);
if
(
last_time
)
{
if
(
have_gil
)
{
...
...
@@ -370,7 +369,7 @@ static __Pyx_memviewslice {{copy_name}}(const __Pyx_memviewslice from_mvs) {
}
}
array_obj
=
__pyx_array_new
(
shape_tuple
,
{{
sizeof_dtype
}},
buf
->
format
,
mode
);
array_obj
=
__pyx_array_new
(
shape_tuple
,
{{
sizeof_dtype
}},
buf
->
format
,
mode
,
NULL
);
if
(
unlikely
(
!
array_obj
))
{
goto
fail
;
}
...
...
@@ -412,12 +411,15 @@ no_fail:
/////////////// MemviewSliceIndex ///////////////
static
CYTHON_INLINE
char
*
__pyx_memviewslice_index_full
(
const
char
*
bufp
,
Py_ssize_t
idx
,
Py_ssize_t
stride
,
Py_ssize_t
suboffset
)
{
static
CYTHON_INLINE
char
*
__pyx_memviewslice_index_full
(
const
char
*
bufp
,
Py_ssize_t
idx
,
Py_ssize_t
stride
,
Py_ssize_t
suboffset
)
{
bufp
=
bufp
+
idx
*
stride
;
if
(
suboffset
>=
0
)
{
bufp
=
*
((
char
**
)
bufp
)
+
suboffset
;
}
return
bufp
;
return
(
char
*
)
bufp
;
}
/////////////// MemviewDtypeToObject.proto ///////////////
...
...
tests/run/cythonarray.pyx
View file @
917cce5e
...
...
@@ -5,6 +5,8 @@ from __future__ import unicode_literals
from
cython
cimport
array
cimport
cython
as
cy
from
libc.stdlib
cimport
malloc
,
free
def
contiguity
():
'''
>>> contiguity()
...
...
@@ -85,19 +87,79 @@ cdef create_array(shape, mode):
return
result
def
test_cython_array
():
def
test_cython_array
_getbuffer
():
"""
>>> test_cython_array()
>>> test_cython_array
_getbuffer
()
98
61
98
61
"""
cdef
int
[:,
::
1
]
carr
=
create_array
((
14
,
10
),
'c'
)
cdef
int
[::
1
,
:]
farr
=
create_array
((
14
,
10
),
'fortran'
)
cdef
int
[:,
::
1
]
cslice
=
create_array
((
14
,
10
),
'c'
)
cdef
int
[::
1
,
:]
fslice
=
create_array
((
14
,
10
),
'fortran'
)
print
cslice
[
9
,
8
]
print
cslice
[
6
,
1
]
print
fslice
[
9
,
8
]
print
fslice
[
6
,
1
]
def
test_cython_array_index
():
"""
>>> test_cython_array_index()
98
61
98
61
"""
c_array
=
create_array
((
14
,
10
),
'c'
)
f_array
=
create_array
((
14
,
10
),
'fortran'
)
print
c_array
[
9
,
8
]
print
c_array
[
6
,
1
]
print
f_array
[
9
,
8
]
print
f_array
[
6
,
1
]
cdef
int
*
getp
(
int
dim1
=
10
,
int
dim2
=
10
)
except
NULL
:
print
"getp()"
cdef
int
*
p
=
<
int
*>
malloc
(
dim1
*
dim2
*
sizeof
(
int
))
if
p
==
NULL
:
raise
MemoryError
for
i
in
range
(
dim1
*
dim2
):
p
[
i
]
=
i
return
p
cdef
void
callback_free_data
(
char
*
p
):
print
'callback free data called'
free
(
p
)
def
test_array_from_pointer
():
"""
>>> test_array_from_pointer()
getp()
69
c
getp()
fortran
getp()
56
getp()
56
callback free data called
"""
cdef
int
*
p
=
getp
()
cdef
array
c_arr
=
<
int
[:
10
,
:
10
]
>
p
c_arr
.
callback_free_data
=
callback_free_data
print
c_arr
[
6
,
9
]
print
c_arr
.
mode
print
carr
[
9
,
8
]
print
carr
[
6
,
1
]
print
(
<
int
[:
10
:
1
,
:
10
]
>
getp
()).
mode
print
farr
[
9
,
8
]
print
farr
[
6
,
1
]
cdef
int
[:,
::
1
]
mslice
=
<
int
[:
10
,
:
10
]
>
getp
()
print
mslice
[
5
,
6
]
print
(
<
int
[:
12
,
:
10
]
>
getp
(
12
,
10
))[
5
,
6
]
tests/run/memoryview.pyx
View file @
917cce5e
...
...
@@ -219,28 +219,20 @@ def get_int_2d(int[:, :] mslice, int i, int j):
>>> C = IntMockBuffer("C", range(6), (2,3))
>>> get_int_2d(C, 1, 1)
acquired C
acquired C
released C
released C
4
Check negative indexing:
>>> get_int_2d(C, -1, 0)
acquired C
acquired C
released C
released C
3
>>> get_int_2d(C, -1, -2)
acquired C
acquired C
released C
released C
4
>>> get_int_2d(C, -2, -3)
acquired C
acquired C
released C
released C
0
...
...
@@ -265,50 +257,34 @@ def set_int_2d(int[:, :] mslice, int i, int j, int value):
>>> C = IntMockBuffer("C", range(6), (2,3))
>>> set_int_2d(C, 1, 1, 10)
acquired C
acquired C
released C
released C
>>> get_int_2d(C, 1, 1)
acquired C
acquired C
released C
released C
10
Check negative indexing:
>>> set_int_2d(C, -1, 0, 3)
acquired C
acquired C
released C
released C
>>> get_int_2d(C, -1, 0)
acquired C
acquired C
released C
released C
3
>>> set_int_2d(C, -1, -2, 8)
acquired C
acquired C
released C
released C
>>> get_int_2d(C, -1, -2)
acquired C
acquired C
released C
released C
8
>>> set_int_2d(C, -2, -3, 9)
acquired C
acquired C
released C
released C
>>> get_int_2d(C, -2, -3)
acquired C
acquired C
released C
released C
9
...
...
@@ -336,8 +312,6 @@ def writable(unsigned short int[:, :, :] mslice):
>>> R = UnsignedShortMockBuffer("R", range(27), shape=(3, 3, 3))
>>> writable(R)
acquired R
acquired R
released R
released R
>>> [str(x) for x in R.recieved_flags] # Py2/3
['FORMAT', 'ND', 'STRIDES', 'WRITABLE']
...
...
@@ -350,8 +324,6 @@ def strided(int[:] mslice):
>>> A = IntMockBuffer("A", range(4))
>>> strided(A)
acquired A
acquired A
released A
released A
2
...
...
@@ -410,16 +382,12 @@ def generic(int[::view.generic, ::view.generic] mslice1,
>>> generic(A, B)
acquired A
acquired B
acquired A
acquired B
4
4
10
11
released A
released B
released A
released B
"""
buf1
,
buf2
=
mslice1
,
mslice2
...
...
@@ -440,16 +408,12 @@ def generic_contig(int[::view.generic_contiguous, :] mslice1,
>>> generic_contig(A, B)
acquired A
acquired B
acquired A
acquired B
4
4
10
11
released A
released B
released A
released B
"""
buf1
,
buf2
=
mslice1
,
mslice2
...
...
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