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Boxiang Sun
cython
Commits
f37f7bd3
Commit
f37f7bd3
authored
Dec 25, 2011
by
Mark Florisson
Browse files
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Plain Diff
Optimize indexing when slicing memviews & move to utility
parent
a54b1631
Changes
5
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Side-by-side
Showing
5 changed files
with
140 additions
and
90 deletions
+140
-90
Cython/Compiler/ExprNodes.py
Cython/Compiler/ExprNodes.py
+1
-4
Cython/Compiler/MemoryView.py
Cython/Compiler/MemoryView.py
+57
-54
Cython/Compiler/Nodes.py
Cython/Compiler/Nodes.py
+0
-1
Cython/Utility/MemoryView.pyx
Cython/Utility/MemoryView.pyx
+15
-31
Cython/Utility/MemoryView_C.c
Cython/Utility/MemoryView_C.c
+67
-0
No files found.
Cython/Compiler/ExprNodes.py
View file @
f37f7bd3
...
@@ -1811,7 +1811,6 @@ class NameNode(AtomicExprNode):
...
@@ -1811,7 +1811,6 @@ class NameNode(AtomicExprNode):
lhs_pos
=
self
.
pos
,
lhs_pos
=
self
.
pos
,
rhs
=
rhs
,
rhs
=
rhs
,
code
=
code
,
code
=
code
,
incref_rhs
=
rhs
.
is_name
,
have_gil
=
not
self
.
in_nogil_context
)
have_gil
=
not
self
.
in_nogil_context
)
def
generate_acquire_buffer
(
self
,
rhs
,
code
):
def
generate_acquire_buffer
(
self
,
rhs
,
code
):
...
@@ -2571,7 +2570,6 @@ class IndexNode(ExprNode):
...
@@ -2571,7 +2570,6 @@ class IndexNode(ExprNode):
# All indices with all start/stop/step for slices.
# All indices with all start/stop/step for slices.
# We need to keep this around
# We need to keep this around
self
.
indices
=
new_indices
self
.
indices
=
new_indices
self
.
env
=
env
self
.
env
=
env
elif
self
.
base
.
type
.
is_buffer
:
elif
self
.
base
.
type
.
is_buffer
:
...
@@ -4525,8 +4523,7 @@ class AttributeNode(ExprNode):
...
@@ -4525,8 +4523,7 @@ class AttributeNode(ExprNode):
elif
self
.
type
.
is_memoryviewslice
:
elif
self
.
type
.
is_memoryviewslice
:
import
MemoryView
import
MemoryView
MemoryView
.
put_assign_to_memviewslice
(
MemoryView
.
put_assign_to_memviewslice
(
select_code
,
rhs
.
result
(),
self
.
type
,
code
,
select_code
,
rhs
,
rhs
.
result
(),
self
.
type
,
code
)
incref_rhs
=
rhs
.
is_name
)
if
not
self
.
type
.
is_memoryviewslice
:
if
not
self
.
type
.
is_memoryviewslice
:
code
.
putln
(
code
.
putln
(
...
...
Cython/Compiler/MemoryView.py
View file @
f37f7bd3
...
@@ -79,7 +79,7 @@ def mangle_dtype_name(dtype):
...
@@ -79,7 +79,7 @@ def mangle_dtype_name(dtype):
# return "".join([access[0].upper()+packing[0] for (access, packing) in axes])
# return "".join([access[0].upper()+packing[0] for (access, packing) in axes])
def
put_acquire_memoryviewslice
(
lhs_cname
,
lhs_type
,
lhs_pos
,
rhs
,
code
,
def
put_acquire_memoryviewslice
(
lhs_cname
,
lhs_type
,
lhs_pos
,
rhs
,
code
,
incref_rhs
=
False
,
have_gil
=
False
):
have_gil
=
False
):
assert
rhs
.
type
.
is_memoryviewslice
assert
rhs
.
type
.
is_memoryviewslice
pretty_rhs
=
isinstance
(
rhs
,
NameNode
)
or
rhs
.
result_in_temp
()
pretty_rhs
=
isinstance
(
rhs
,
NameNode
)
or
rhs
.
result_in_temp
()
...
@@ -91,16 +91,16 @@ def put_acquire_memoryviewslice(lhs_cname, lhs_type, lhs_pos, rhs, code,
...
@@ -91,16 +91,16 @@ def put_acquire_memoryviewslice(lhs_cname, lhs_type, lhs_pos, rhs, code,
# Allow uninitialized assignment
# Allow uninitialized assignment
#code.putln(code.put_error_if_unbound(lhs_pos, rhs.entry))
#code.putln(code.put_error_if_unbound(lhs_pos, rhs.entry))
put_assign_to_memviewslice
(
lhs_cname
,
rhs
tmp
,
lhs_type
,
code
,
incref_rhs
,
put_assign_to_memviewslice
(
lhs_cname
,
rhs
,
rhstmp
,
lhs_type
,
code
,
have_gil
=
have_gil
)
have_gil
=
have_gil
)
if
not
pretty_rhs
:
if
not
pretty_rhs
:
code
.
funcstate
.
release_temp
(
rhstmp
)
code
.
funcstate
.
release_temp
(
rhstmp
)
def
put_assign_to_memviewslice
(
lhs_cname
,
rhs_cname
,
memviewslicetype
,
code
,
def
put_assign_to_memviewslice
(
lhs_cname
,
rhs
,
rhs
_cname
,
memviewslicetype
,
code
,
incref_rhs
=
False
,
have_gil
=
False
):
have_gil
=
False
):
code
.
put_xdecref_memoryviewslice
(
lhs_cname
,
have_gil
=
have_gil
)
code
.
put_xdecref_memoryviewslice
(
lhs_cname
,
have_gil
=
have_gil
)
if
incref_rhs
:
if
rhs
.
is_name
:
code
.
put_incref_memoryviewslice
(
rhs_cname
,
have_gil
=
have_gil
)
code
.
put_incref_memoryviewslice
(
rhs_cname
,
have_gil
=
have_gil
)
code
.
putln
(
"%s = %s;"
%
(
lhs_cname
,
rhs_cname
))
code
.
putln
(
"%s = %s;"
%
(
lhs_cname
,
rhs_cname
))
...
@@ -269,59 +269,52 @@ class MemoryViewSliceBufferEntry(Buffer.BufferEntry):
...
@@ -269,59 +269,52 @@ class MemoryViewSliceBufferEntry(Buffer.BufferEntry):
Simply call __pyx_memoryview_slice_memviewslice with the right
Simply call __pyx_memoryview_slice_memviewslice with the right
arguments.
arguments.
"""
"""
slicefunc
=
"__pyx_memoryview_slice_memviewslice"
new_ndim
=
0
new_ndim
=
0
cname
=
self
.
cname
src
=
self
.
cname
suboffset_dim
=
code
.
funcstate
.
allocate_temp
(
PyrexTypes
.
c_int_type
,
def
load_slice_util
(
name
,
dict
):
False
)
proto
,
impl
=
TempitaUtilityCode
.
load_as_string
(
name
,
"MemoryView_C.c"
,
context
=
dict
)
index_code
=
(
"%(slicefunc)s(&%(cname)s, &%(dst)s, %(have_gil)d, "
return
impl
"%(dim)d, %(new_ndim)d, &%(suboffset_dim)s, "
"%(idx)s, 0, 0, 0, 0, 0, 0)"
)
all_dimensions_direct
=
True
for
access
,
packing
in
self
.
type
.
axes
:
slice_code
=
(
"%(slicefunc)s(&%(cname)s, &%(dst)s, %(have_gil)d, "
if
access
!=
'direct'
:
"/* dim */ %(dim)d, "
all_dimensions_direct
=
False
"/* new_ndim */ %(new_ndim)d, "
break
"/* suboffset_dim */ &%(suboffset_dim)s, "
"/* start */ %(start)s, "
have_slices
=
False
"/* stop */ %(stop)s, "
for
index
in
indices
:
"/* step */ %(step)s, "
if
isinstance
(
index
,
ExprNodes
.
SliceNode
):
"/* have_start */ %(have_start)d, "
have_slices
=
True
"/* have_stop */ %(have_stop)d, "
break
"/* have_step */ %(have_step)d, "
"/* is_slice */ 1)"
)
no_suboffset_dim
=
all_dimensions_direct
and
not
have_slices
if
not
no_suboffset_dim
:
def
generate_slice_call
(
expr
):
suboffset_dim
=
code
.
funcstate
.
allocate_temp
(
pos
=
index
.
pos
PyrexTypes
.
c_int_type
,
False
)
code
.
putln
(
"%s = -1;"
%
suboffset_dim
)
if
have_gil
:
code
.
putln
(
code
.
error_goto_if
(
expr
,
pos
))
code
.
putln
(
"%(dst)s.data = %(src)s.data;"
%
locals
())
else
:
code
.
putln
(
"%(dst)s.memview = %(src)s.memview;"
%
locals
())
code
.
putln
(
"{"
)
code
.
putln
(
"const char *__pyx_t_result = %s;"
%
expr
)
code
.
putln
(
"if (unlikely(__pyx_t_result)) {"
)
code
.
put_ensure_gil
()
code
.
putln
(
"PyErr_Format(PyExc_IndexError, "
"__pyx_t_result, %d);"
%
dim
)
code
.
put_release_ensured_gil
()
code
.
putln
(
code
.
error_goto
(
pos
))
code
.
putln
(
"}"
)
code
.
putln
(
"}"
)
code
.
putln
(
"%s = -1;"
%
suboffset_dim
)
code
.
putln
(
"%(dst)s.data = %(cname)s.data;"
%
locals
())
code
.
putln
(
"%(dst)s.memview = %(cname)s.memview;"
%
locals
())
code
.
put_incref_memoryviewslice
(
dst
)
code
.
put_incref_memoryviewslice
(
dst
)
for
dim
,
index
in
enumerate
(
indices
):
for
dim
,
index
in
enumerate
(
indices
):
error_goto
=
code
.
error_goto
(
index
.
pos
)
if
not
isinstance
(
index
,
ExprNodes
.
SliceNode
):
if
not
isinstance
(
index
,
ExprNodes
.
SliceNode
):
# normal index
idx
=
index
.
result
()
idx
=
index
.
result
()
generate_slice_call
(
index_code
%
locals
())
d
=
locals
()
access
,
packing
=
self
.
type
.
axes
[
dim
]
if
access
!=
'direct'
:
return
error
(
index
.
pos
,
"Dimension cannot be indexed away, "
"must be direct"
)
code
.
put
(
load_slice_util
(
"SliceIndex"
,
d
))
else
:
else
:
d
=
{}
# slice, unspecified dimension, or part of ellipsis
d
=
locals
()
for
s
in
"start stop step"
.
split
():
for
s
in
"start stop step"
.
split
():
idx
=
getattr
(
index
,
s
)
idx
=
getattr
(
index
,
s
)
have_idx
=
d
[
'have_'
+
s
]
=
not
idx
.
is_none
have_idx
=
d
[
'have_'
+
s
]
=
not
idx
.
is_none
...
@@ -330,11 +323,21 @@ class MemoryViewSliceBufferEntry(Buffer.BufferEntry):
...
@@ -330,11 +323,21 @@ class MemoryViewSliceBufferEntry(Buffer.BufferEntry):
else
:
else
:
d
[
s
]
=
"0"
d
[
s
]
=
"0"
d
.
update
(
locals
())
if
(
not
d
[
'have_start'
]
and
generate_slice_call
(
slice_code
%
d
)
not
d
[
'have_stop'
]
and
not
d
[
'have_step'
]):
# full slice (:), simply copy over the extent, stride
# and suboffset. Also update suboffset_dim if needed
access
,
packing
=
self
.
type
.
axes
[
dim
]
d
[
'access'
]
=
access
code
.
put
(
load_slice_util
(
"SimpleSlice"
,
d
))
else
:
code
.
put
(
load_slice_util
(
"ToughSlice"
,
d
))
new_ndim
+=
1
new_ndim
+=
1
code
.
funcstate
.
release_temp
(
suboffset_dim
)
if
not
no_suboffset_dim
:
code
.
funcstate
.
release_temp
(
suboffset_dim
)
def
empty_slice
(
pos
):
def
empty_slice
(
pos
):
...
...
Cython/Compiler/Nodes.py
View file @
f37f7bd3
...
@@ -5168,7 +5168,6 @@ class ReturnStatNode(StatNode):
...
@@ -5168,7 +5168,6 @@ class ReturnStatNode(StatNode):
lhs_pos
=
self
.
value
.
pos
,
lhs_pos
=
self
.
value
.
pos
,
rhs
=
self
.
value
,
rhs
=
self
.
value
,
code
=
code
,
code
=
code
,
incref_rhs
=
self
.
value
.
is_name
,
have_gil
=
self
.
in_nogil_context
)
have_gil
=
self
.
in_nogil_context
)
else
:
else
:
self
.
value
.
make_owned_reference
(
code
)
self
.
value
.
make_owned_reference
(
code
)
...
...
Cython/Utility/MemoryView.pyx
View file @
f37f7bd3
...
@@ -583,7 +583,7 @@ cdef memoryview memview_slice(memoryview memview, object indices):
...
@@ -583,7 +583,7 @@ cdef memoryview memview_slice(memoryview memview, object indices):
for
dim
,
index
in
enumerate
(
indices
):
for
dim
,
index
in
enumerate
(
indices
):
if
PyIndex_Check
(
index
):
if
PyIndex_Check
(
index
):
slice_memviewslice
(
p_src
,
p_dst
,
True
,
dim
,
new_ndim
,
p_suboffset_dim
,
slice_memviewslice
(
p_src
,
p_dst
,
dim
,
new_ndim
,
p_suboffset_dim
,
index
,
0
,
0
,
0
,
0
,
0
,
False
)
index
,
0
,
0
,
0
,
0
,
0
,
False
)
else
:
else
:
start
=
index
.
start
or
0
start
=
index
.
start
or
0
...
@@ -594,7 +594,7 @@ cdef memoryview memview_slice(memoryview memview, object indices):
...
@@ -594,7 +594,7 @@ cdef memoryview memview_slice(memoryview memview, object indices):
have_stop
=
index
.
stop
is
not
None
have_stop
=
index
.
stop
is
not
None
have_step
=
index
.
step
is
not
None
have_step
=
index
.
step
is
not
None
slice_memviewslice
(
p_src
,
p_dst
,
True
,
dim
,
new_ndim
,
p_suboffset_dim
,
slice_memviewslice
(
p_src
,
p_dst
,
dim
,
new_ndim
,
p_suboffset_dim
,
start
,
stop
,
step
,
have_start
,
have_stop
,
have_step
,
start
,
stop
,
step
,
have_start
,
have_stop
,
have_step
,
True
)
True
)
new_ndim
+=
1
new_ndim
+=
1
...
@@ -628,9 +628,8 @@ cdef extern from "pystate.h":
...
@@ -628,9 +628,8 @@ cdef extern from "pystate.h":
PyObject
*
PyErr_Format
(
PyObject
*
exc
,
char
*
msg
,
...)
nogil
PyObject
*
PyErr_Format
(
PyObject
*
exc
,
char
*
msg
,
...)
nogil
@
cname
(
'__pyx_memoryview_slice_memviewslice'
)
@
cname
(
'__pyx_memoryview_slice_memviewslice'
)
cdef
char
*
slice_memviewslice
({{
memviewslice_name
}}
*
src
,
cdef
int
slice_memviewslice
({{
memviewslice_name
}}
*
src
,
{{
memviewslice_name
}}
*
dst
,
{{
memviewslice_name
}}
*
dst
,
bint
have_gil
,
int
dim
,
int
dim
,
int
new_ndim
,
int
new_ndim
,
int
*
suboffset_dim
,
int
*
suboffset_dim
,
...
@@ -640,11 +639,10 @@ cdef char *slice_memviewslice({{memviewslice_name}} *src,
...
@@ -640,11 +639,10 @@ cdef char *slice_memviewslice({{memviewslice_name}} *src,
int
have_start
,
int
have_start
,
int
have_stop
,
int
have_stop
,
int
have_step
,
int
have_step
,
bint
is_slice
)
nogil
except
*
:
bint
is_slice
)
nogil
except
-
1
:
"""
"""
Create a new slice dst given slice src.
Create a new slice dst given slice src.
have_gil - if true, the GIL must be held and exceptions may be raised
dim - the current src dimension (indexing will make dimensions
dim - the current src dimension (indexing will make dimensions
disappear)
disappear)
new_dim - the new dst dimension
new_dim - the new dst dimension
...
@@ -657,19 +655,6 @@ cdef char *slice_memviewslice({{memviewslice_name}} *src,
...
@@ -657,19 +655,6 @@ cdef char *slice_memviewslice({{memviewslice_name}} *src,
Py_ssize_t
new_shape
Py_ssize_t
new_shape
bint
negative_step
bint
negative_step
# Somehow these pointers are NULL when set as globals... this needs investigation
char
*
ERR_OOB
=
"Index out of bounds (axis %d)"
char
*
ERR_STEP
=
"Step must not be zero (axis %d)"
char
*
ERR_INDIRECT_GIL
=
(
"Cannot make indirect dimension %d disappear "
"through indexing, consider slicing with %d:%d"
)
char
*
ERR_INDIRECT_NOGIL
=
(
"Cannot make indirect dimension %d disappear "
"through indexing"
)
PyObject
*
exc
=
<
PyObject
*>
IndexError
if
have_gil
:
# Assert the GIL
PyThreadState_Get
()
shape
=
src
.
shape
[
dim
]
shape
=
src
.
shape
[
dim
]
stride
=
src
.
strides
[
dim
]
stride
=
src
.
strides
[
dim
]
suboffset
=
src
.
suboffsets
[
dim
]
suboffset
=
src
.
suboffsets
[
dim
]
...
@@ -679,19 +664,15 @@ cdef char *slice_memviewslice({{memviewslice_name}} *src,
...
@@ -679,19 +664,15 @@ cdef char *slice_memviewslice({{memviewslice_name}} *src,
if
start
<
0
:
if
start
<
0
:
start
+=
shape
start
+=
shape
if
not
0
<=
start
<
shape
:
if
not
0
<=
start
<
shape
:
if
have_gil
:
with
gil
:
PyErr_Format
(
exc
,
ERR_OOB
,
dim
)
raise
IndexError
(
"Index out of bounds (axis %d)"
)
return
ERR_OOB
else
:
else
:
# index is a slice
# index is a slice
negative_step
=
have_step
!=
0
and
step
<
0
negative_step
=
have_step
!=
0
and
step
<
0
if
have_step
and
step
==
0
:
if
have_step
and
step
==
0
:
if
have_gil
:
with
gil
:
# ValueError might be more appropriate, but this will make it consistent
raise
ValueError
(
"Step may not be zero (axis %d)"
%
dim
)
# with nogil slicing
PyErr_SetString
(
exc
,
ERR_STEP
)
return
ERR_STEP
# check our bounds and set defaults
# check our bounds and set defaults
if
have_start
:
if
have_start
:
...
@@ -749,13 +730,16 @@ cdef char *slice_memviewslice({{memviewslice_name}} *src,
...
@@ -749,13 +730,16 @@ cdef char *slice_memviewslice({{memviewslice_name}} *src,
if
suboffset
>=
0
:
if
suboffset
>=
0
:
if
not
is_slice
:
if
not
is_slice
:
if
have_gil
:
with
gil
:
PyErr_Format
(
exc
,
ERR_INDIRECT_GIL
,
dim
,
start
,
start
+
1
)
raise
IndexError
(
return
ERR_INDIRECT_NOGIL
"Cannot make indirect dimension %d disappear "
"through indexing, consider slicing with %d:%d"
%
(
dim
,
start
,
start
+
1
))
else
:
else
:
suboffset_dim
[
0
]
=
new_ndim
suboffset_dim
[
0
]
=
new_ndim
return
NULL
return
0
#
#
### Index a memoryview
### Index a memoryview
...
...
Cython/Utility/MemoryView_C.c
View file @
f37f7bd3
...
@@ -688,3 +688,70 @@ int {{set_function}}(const char *itemp, PyObject *obj) {
...
@@ -688,3 +688,70 @@ int {{set_function}}(const char *itemp, PyObject *obj) {
*
(
PyObject
**
)
itemp
=
obj
;
*
(
PyObject
**
)
itemp
=
obj
;
return
1
;
return
1
;
}
}
/////////// ToughSlice //////////
/* Dimension is indexed with 'start:stop:step' */
if
(
unlikely
(
__pyx_memoryview_slice_memviewslice
(
&
{{
src
}},
&
{{
dst
}},
{{
dim
}},
{{
new_ndim
}},
&
{{
suboffset_dim
}},
{{
start
}},
{{
stop
}},
{{
step
}},
{{
int
(
have_start
)}},
{{
int
(
have_stop
)}},
{{
int
(
have_step
)}},
1
)
<
0
))
{
{{
error_goto
}}
}
////////// SimpleSlice //////////
/* Dimension is indexed with ':' only */
{{
dst
}}.
shape
[{{
new_ndim
}}]
=
{{
src
}}.
shape
[{{
dim
}}];
{{
dst
}}.
strides
[{{
new_ndim
}}]
=
{{
src
}}.
strides
[{{
dim
}}];
{{
if
access
==
'
direct
'
}}
{{
dst
}}.
suboffsets
[{{
new_ndim
}}]
=
-
1
;
{{
else
}}
{{
dst
}}.
suboffsets
[{{
new_ndim
}}]
=
{{
src
}}.
suboffsets
[{{
dim
}}];
if
({{
src
}}.
suboffsets
[{{
dim
}}]
>=
0
)
{{
suboffset_dim
}}
=
{{
new_ndim
}};
{{
endif
}}
////////// SliceIndex //////////
/* Dimension is indexed with an integer, we could use the ToughSlice */
/* approach, but this is faster */
{
Py_ssize_t
__pyx_tmp_idx
=
{{
idx
}};
if
(
__pyx_tmp_idx
<
0
)
__pyx_tmp_idx
+=
{{
src
}}.
shape
[{{
dim
}}];
if
(
__pyx_tmp_idx
<
0
||
__pyx_tmp_idx
>=
{{
src
}}.
shape
[{{
dim
}}])
{
{{
if
not
have_gil
}}
#ifdef WITH_THREAD
PyGILState_STATE
__pyx_gilstate_save
=
PyGILState_Ensure
();
#endif
{{
endif
}}
PyErr_SetString
(
PyExc_IndexError
,
"Index out of bounds (axis {{dim}})"
);
{{
if
not
have_gil
}}
#ifdef WITH_THREAD
PyGILState_Release
(
__pyx_gilstate_save
);
#endif
{{
endif
}}
{{
error_goto
}}
}
{{
if
all_dimensions_direct
}}
{{
dst
}}.
data
+=
__pyx_tmp_idx
*
{{
src
}}.
strides
[{{
dim
}}];
{{
else
}}
if
({{
suboffset_dim
}}
<
0
)
{{
dst
}}.
data
+=
__pyx_tmp_idx
*
{{
src
}}.
strides
[{{
dim
}}];
else
{{
dst
}}.
suboffsets
[{{
suboffset_dim
}}]
=
__pyx_tmp_idx
*
{{
src
}}.
strides
[{{
dim
}}];
{{
endif
}}
}
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