Add `source_branch` option for various git operations
If `source_branch` option is passed, and target branch cannot be found, `Repository#update_branch_with_hooks` would try to create a new branch from `source_branch`. This way, we could make changes in the new branch while only firing the hooks once for the changes. Previously, we can only create a new branch first then make changes to the new branch, firing hooks twice. This behaviour is bad for CI. Fixes #7237
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