Commit 3c970a42 authored by Ivan Tyagov's avatar Ivan Tyagov

Initial import of work of Roque for data lake functionality

Add register form based on erp5_credential bt5.
Create Credential Requst at server side.

/reviewed-on nexedi/wendelin!32
parent edff96ea
<?xml version="1.0"?>
<ZopeData>
<record id="1" aka="AAAAAAAAAAE=">
<pickle>
<global name="ActionInformation" module="Products.CMFCore.ActionInformation"/>
</pickle>
<pickle>
<dictionary>
<item>
<key> <string>action</string> </key>
<value>
<persistent> <string encoding="base64">AAAAAAAAAAI=</string> </persistent>
</value>
</item>
<item>
<key> <string>categories</string> </key>
<value>
<tuple>
<string>action_type/object_view</string>
</tuple>
</value>
</item>
<item>
<key> <string>category</string> </key>
<value> <string>object_view</string> </value>
</item>
<item>
<key> <string>condition</string> </key>
<value> <string></string> </value>
</item>
<item>
<key> <string>description</string> </key>
<value>
<none/>
</value>
</item>
<item>
<key> <string>icon</string> </key>
<value> <string></string> </value>
</item>
<item>
<key> <string>id</string> </key>
<value> <string>view</string> </value>
</item>
<item>
<key> <string>permissions</string> </key>
<value>
<tuple>
<string>View</string>
</tuple>
</value>
</item>
<item>
<key> <string>portal_type</string> </key>
<value> <string>Action Information</string> </value>
</item>
<item>
<key> <string>priority</string> </key>
<value> <float>1.0</float> </value>
</item>
<item>
<key> <string>title</string> </key>
<value> <string>View</string> </value>
</item>
<item>
<key> <string>visible</string> </key>
<value> <int>1</int> </value>
</item>
</dictionary>
</pickle>
</record>
<record id="2" aka="AAAAAAAAAAI=">
<pickle>
<global name="Expression" module="Products.CMFCore.Expression"/>
</pickle>
<pickle>
<dictionary>
<item>
<key> <string>text</string> </key>
<value> <string>string:${object_url}/DataDescriptor_view</string> </value>
</item>
</dictionary>
</pickle>
</record>
</ZopeData>
<?xml version="1.0"?>
<ZopeData>
<record id="1" aka="AAAAAAAAAAE=">
<pickle>
<global name="Base Category" module="erp5.portal_type"/>
</pickle>
<pickle>
<dictionary>
<item>
<key> <string>_count</string> </key>
<value>
<persistent> <string encoding="base64">AAAAAAAAAAI=</string> </persistent>
</value>
</item>
<item>
<key> <string>_mt_index</string> </key>
<value>
<persistent> <string encoding="base64">AAAAAAAAAAM=</string> </persistent>
</value>
</item>
<item>
<key> <string>_tree</string> </key>
<value>
<persistent> <string encoding="base64">AAAAAAAAAAQ=</string> </persistent>
</value>
</item>
<item>
<key> <string>acquisition_append_value</string> </key>
<value> <int>0</int> </value>
</item>
<item>
<key> <string>acquisition_base_category</string> </key>
<value>
<tuple>
<string>subordination</string>
<string>parent</string>
</tuple>
</value>
</item>
<item>
<key> <string>acquisition_copy_value</string> </key>
<value> <int>0</int> </value>
</item>
<item>
<key> <string>acquisition_mask_value</string> </key>
<value> <int>1</int> </value>
</item>
<item>
<key> <string>acquisition_object_id</string> </key>
<value>
<tuple>
<string>default_career</string>
<string>source_function</string>
<string>destination_function</string>
</tuple>
</value>
</item>
<item>
<key> <string>acquisition_portal_type</string> </key>
<value> <string>python: list( portal.getPortalAcquisitionMovementTypeList() + portal.getPortalItemTypeList() + portal.getPortalDeliveryTypeList() + portal.getPortalOrderTypeList() + portal.getPortalInvoiceTypeList() ) + [\'Organisation\', \'Career\']</string> </value>
</item>
<item>
<key> <string>acquisition_sync_value</string> </key>
<value> <int>0</int> </value>
</item>
<item>
<key> <string>categories</string> </key>
<value>
<tuple/>
</value>
</item>
<item>
<key> <string>category_type</string> </key>
<value>
<tuple>
<string>assignment</string>
</tuple>
</value>
</item>
<item>
<key> <string>criterion_property</string> </key>
<value>
<tuple/>
</value>
</item>
<item>
<key> <string>description</string> </key>
<value> <string>Function correspond to the task you do day by day.</string> </value>
</item>
<item>
<key> <string>fallback_base_category</string> </key>
<value>
<tuple/>
</value>
</item>
<item>
<key> <string>id</string> </key>
<value> <string>function</string> </value>
</item>
<item>
<key> <string>id_generator</string> </key>
<value>
<none/>
</value>
</item>
<item>
<key> <string>id_group</string> </key>
<value>
<none/>
</value>
</item>
<item>
<key> <string>membership_criterion_base_category</string> </key>
<value>
<tuple/>
</value>
</item>
<item>
<key> <string>membership_criterion_category</string> </key>
<value>
<tuple/>
</value>
</item>
<item>
<key> <string>multimembership_criterion_base_category</string> </key>
<value>
<tuple/>
</value>
</item>
<item>
<key> <string>portal_type</string> </key>
<value> <string>Base Category</string> </value>
</item>
<item>
<key> <string>read_permission</string> </key>
<value>
<none/>
</value>
</item>
<item>
<key> <string>rid</string> </key>
<value>
<none/>
</value>
</item>
<item>
<key> <string>short_title</string> </key>
<value>
<none/>
</value>
</item>
<item>
<key> <string>sid</string> </key>
<value>
<none/>
</value>
</item>
<item>
<key> <string>test_method_id</string> </key>
<value>
<tuple/>
</value>
</item>
<item>
<key> <string>title</string> </key>
<value> <string>Function</string> </value>
</item>
<item>
<key> <string>write_permission</string> </key>
<value>
<none/>
</value>
</item>
</dictionary>
</pickle>
</record>
<record id="2" aka="AAAAAAAAAAI=">
<pickle>
<global name="Length" module="BTrees.Length"/>
</pickle>
<pickle> <int>0</int> </pickle>
</record>
<record id="3" aka="AAAAAAAAAAM=">
<pickle>
<global name="OOBTree" module="BTrees.OOBTree"/>
</pickle>
<pickle>
<none/>
</pickle>
</record>
<record id="4" aka="AAAAAAAAAAQ=">
<pickle>
<global name="OOBTree" module="BTrees.OOBTree"/>
</pickle>
<pickle>
<none/>
</pickle>
</record>
</ZopeData>
<?xml version="1.0"?>
<ZopeData>
<record id="1" aka="AAAAAAAAAAE=">
<pickle>
<global name="Base Category" module="erp5.portal_type"/>
</pickle>
<pickle>
<dictionary>
<item>
<key> <string>_count</string> </key>
<value>
<persistent> <string encoding="base64">AAAAAAAAAAI=</string> </persistent>
</value>
</item>
<item>
<key> <string>_mt_index</string> </key>
<value>
<persistent> <string encoding="base64">AAAAAAAAAAM=</string> </persistent>
</value>
</item>
<item>
<key> <string>_tree</string> </key>
<value>
<persistent> <string encoding="base64">AAAAAAAAAAQ=</string> </persistent>
</value>
</item>
<item>
<key> <string>acquisition_base_category</string> </key>
<value>
<tuple>
<string>order</string>
<string>parent</string>
</tuple>
</value>
</item>
<item>
<key> <string>acquisition_portal_type</string> </key>
<value> <string>python: list(portal.getPortalAcquisitionMovementTypeList() + portal.getPortalItemTypeList())</string> </value>
</item>
<item>
<key> <string>categories</string> </key>
<value>
<tuple>
<string>use</string>
</tuple>
</value>
</item>
<item>
<key> <string>description</string> </key>
<value> <string>Defines resources utilisation in system, allows to\n
distinguish resources by its usage - sell able, purchasable, taxes,\n
discount, any other special utilisation.</string> </value>
</item>
<item>
<key> <string>id</string> </key>
<value> <string>use</string> </value>
</item>
<item>
<key> <string>portal_type</string> </key>
<value> <string>Base Category</string> </value>
</item>
<item>
<key> <string>title</string> </key>
<value> <string>Use</string> </value>
</item>
</dictionary>
</pickle>
</record>
<record id="2" aka="AAAAAAAAAAI=">
<pickle>
<global name="Length" module="BTrees.Length"/>
</pickle>
<pickle> <int>0</int> </pickle>
</record>
<record id="3" aka="AAAAAAAAAAM=">
<pickle>
<global name="OOBTree" module="BTrees.OOBTree"/>
</pickle>
<pickle>
<none/>
</pickle>
</record>
<record id="4" aka="AAAAAAAAAAQ=">
<pickle>
<global name="OOBTree" module="BTrees.OOBTree"/>
</pickle>
<pickle>
<none/>
</pickle>
</record>
</ZopeData>
import os
import csv
import mne
import json
import numpy as np
from DateTime import DateTime
from mne.report import Report
from Products.ERP5Type.Log import log
from lxml.html import parse
CHUNK_SIZE = 200000
CHUNK_SIZE_TXT = 50000
CHUNK_SIZE_CSV = 25
BIG_FILE = 5000000000 #5GB
def saveRawFile(data_stream, file_name):
data_stream_chunk = None
n_chunk = 0
chunk_size = CHUNK_SIZE
while True:
start_offset = n_chunk*chunk_size
end_offset = n_chunk*chunk_size+chunk_size
try:
data_stream_chunk = ''.join(data_stream.readChunkList(start_offset, end_offset))
except:
raise StandardError("Empty Data Stream")
if data_stream_chunk == "": break
with open(file_name, 'a') as fif_file:
fif_file.write(data_stream_chunk)
n_chunk += 1
def getJSONfromTextFile(file_name):
try:
data = {}
chunk_size = CHUNK_SIZE_TXT
with open(file_name, 'r') as text_file:
first_chunk = text_file.read(chunk_size)
data["File content sample: "] = first_chunk
json_data = json.dumps(data)
return json_data
except Exception as e:
log("Error while getting JSON from text file: " + str(e))
return ""
def getMNEReportJSON(file_name, raw):
try:
pattern = file_name + "_raw.fif"
report_file = file_name + 'report.html'
os.rename(file_name, pattern)
report = Report(verbose=True)
report.parse_folder(data_path="./", pattern=[pattern])
report.save(report_file, overwrite=True, open_browser=False)
data = {}
doc = parse(report_file)
results = doc.xpath("//table[@class = 'table table-hover']")
rows = iter(results[0])
for row in rows:
data[row[0].text] = row[1].text
json_data = json.dumps(data)
return json_data
except Exception as e:
log("Error while getting JSON Report: " + str(e))
return ""
finally:
if os.path.exists(pattern):
os.rename(pattern, file_name)
if os.path.exists(report_file):
os.remove(report_file)
def getRawData(file_name):
raw = None
try:
raw = mne.io.read_raw_fif(file_name, preload=False, verbose=None)
except:
pass
if raw is None:
try:
raw = mne.io.read_raw_edf(file_name, preload=False, verbose=None)
except:
pass
if raw is None: raise StandardError("the file does not contain raw data.")
return raw
def processFifData(file_name, data_array, data_descriptor):
raw = getRawData(file_name)
try:
json_report = getMNEReportJSON(file_name, raw)
data_descriptor.setTextContent(json_report)
except Exception as e:
log("Error handling Data Descriptor content: " + str(e))
picks = mne.pick_types(raw.info)
if len(picks) == 0: raise StandardError("The raw data does not contain any element")
data, times = raw[picks[:1]] # get data from first pick to get shape
dtype = data.dtype
data_array.initArray(data.shape, dtype)
zarray = data_array.getArray()
zarray[0] = data[0]
data_array.setArray(zarray)
for pick in xrange(1, len(picks)):
data, times = raw[pick]
zarray = data_array.getArray()
zarray.append(data)
data_array.setArray(zarray)
def processTextData(file_name, data_array, data_descriptor):
try:
json_report = getJSONfromTextFile(file_name)
data_descriptor.setTextContent(json_report)
except Exception as e:
log("Error handling Data Descriptor content: " + str(e))
def processCsvData(file_name, data_array, data_descriptor, delimiter=","):
def gen_csv_chunks(reader, chunksize=CHUNK_SIZE_CSV):
chunk = []
for index, line in enumerate(reader):
if (index % chunksize == 0 and index > 0):
yield chunk
del chunk[:]
chunk.append(line)
yield chunk
def appendArray(array, data_array, columns, initialize=False):
def getFloat(s):
try:
float(s)
return float(s)
except:
return float(0)
init = 0
if initialize:
data_array.initArray((1, columns), np.dtype('float64'))
zarray = data_array.getArray()
zarray[0] = [getFloat(x) for x in array[0]]
data_array.setArray(zarray)
init = 1
for i in xrange(init, len(array)):
if len(array[i]) == columns:
zarray = data_array.getArray()
zarray.append([[getFloat(x) for x in array[i]]])
data_array.setArray(zarray)
try:
with open(file_name, 'r') as csv_file:
reader = csv.reader(csv_file, delimiter=delimiter)
csv_file.seek(0)
for i, chunk in enumerate(gen_csv_chunks(reader)):
if i==0:
try:
initialize = True
columns = len(chunk[0])
data = {}
data["csv"] = chunk
json_data = json.dumps(data)
except Exception as e:
log("Error while getting JSON from csv file: " + str(e))
return ""
# super inefficient: takes minutes for a csv file of 5MB (57860 rows)
appendArray(chunk, data_array, columns, initialize)
# so returning after first chunk
data_descriptor.setTextContent(json_data)
return
initialize = False
data_descriptor.setTextContent(json_data)
except Exception as e:
log("Error handling csv Data Descriptor content: " + str(e))
def processTsvData(file_name, data_array, data_descriptor):
processCsvData(file_name, data_array, data_descriptor, delimiter="\t")
def processNiiData(file_name, data_array, data_descriptor, gz=False):
old_file = file_name
file_name = file_name + ".nii.gz" if gz else file_name + ".nii"
os.rename(old_file, file_name)
try:
import nibabel as nib
img = nib.load(file_name)
data = {}
for key in img.header:
try:
if type(img.header[key]) is np.ndarray:
content = img.header[key].tolist()
try:
if np.isnan(img.header[key]): content = "nan"
except:
pass
else:
content = img.header[key]
if content == 0: content = "0"
json.dumps(content)
if content != "":
data[key] = content
except Exception as e:
pass # ignore non serializable info
json_data = json.dumps(data)
data_descriptor.setTextContent(json_data)
except Exception as e:
log("Error handling Data Descriptor nii content: " + str(e))
raise e
finally:
os.rename(file_name, old_file)
def processGZData(file_name, data_array, data_descriptor):
try:
processNiiData(file_name, data_array, data_descriptor, gz=True)
except:
raise KeyError("gz")
def processRawData(data_stream, data_array, data_descriptor, reference_extension):
content = {"File content":"empty"}
if data_stream.getSize() == 0:
data_descriptor.setTextContent(json.dumps(content))
return "Empty Data Stream"
if data_stream.getSize() > BIG_FILE:
log("Ingested file bigger than 5GB, get metadata process skiped")
return "File bigger than 5GB"
file_name = "temporal_file_%s" % DateTime().strftime('%Y%m%d-%H%M%S')
try:
saveRawFile(data_stream, file_name)
except Exception as e:
if os.path.exists(file_name):
os.remove(file_name)
return "Error while processing raw data - saving file: " + str(e)
options = {"fif" : processFifData,
"nii" : processNiiData,
"mgz" : processNiiData,
"txt" : processTextData,
"csv" : processCsvData,
"tsv" : processTsvData,
"gz" : processGZData,
"default" : processTextData,
}
try:
if reference_extension in options:
options[reference_extension](file_name, data_array, data_descriptor)
else:
options["default"](file_name, data_array, data_descriptor)
except KeyError, e:
return "Proccessing for data in this %s not implemented yet." % reference_extension
except Exception as e:
return "Error while processing raw data: " + str(e)
finally:
if os.path.exists(file_name):
os.remove(file_name)
return "Raw data processed."
\ No newline at end of file
<?xml version="1.0"?>
<ZopeData>
<record id="1" aka="AAAAAAAAAAE=">
<pickle>
<global name="Extension Component" module="erp5.portal_type"/>
</pickle>
<pickle>
<dictionary>
<item>
<key> <string>_recorded_property_dict</string> </key>
<value>
<persistent> <string encoding="base64">AAAAAAAAAAI=</string> </persistent>
</value>
</item>
<item>
<key> <string>default_reference</string> </key>
<value> <string>external_process_raw_data</string> </value>
</item>
<item>
<key> <string>description</string> </key>
<value>
<none/>
</value>
</item>
<item>
<key> <string>id</string> </key>
<value> <string>extension.erp5.external_process_raw_data</string> </value>
</item>
<item>
<key> <string>language</string> </key>
<value>
<none/>
</value>
</item>
<item>
<key> <string>portal_type</string> </key>
<value> <string>Extension Component</string> </value>
</item>
<item>
<key> <string>sid</string> </key>
<value>
<none/>
</value>
</item>
<item>
<key> <string>text_content_error_message</string> </key>
<value>
<tuple/>
</value>
</item>
<item>
<key> <string>text_content_warning_message</string> </key>
<value>
<tuple>
<string>W: 74, 2: No exception type(s) specified (bare-except)</string>
<string>W: 79, 4: No exception type(s) specified (bare-except)</string>
<string>W: 95, 8: Unused variable \'times\' (unused-variable)</string>
<string>W:131, 6: No exception type(s) specified (bare-except)</string>
<string>W:166, 8: Unreachable code (unreachable)</string>
<string>W:184, 11: Using type() instead of isinstance() for a typecheck. (unidiomatic-typecheck)</string>
<string>W:188, 10: No exception type(s) specified (bare-except)</string>
</tuple>
</value>
</item>
<item>
<key> <string>version</string> </key>
<value> <string>erp5</string> </value>
</item>
<item>
<key> <string>workflow_history</string> </key>
<value>
<persistent> <string encoding="base64">AAAAAAAAAAM=</string> </persistent>
</value>
</item>
</dictionary>
</pickle>
</record>
<record id="2" aka="AAAAAAAAAAI=">
<pickle>
<global name="PersistentMapping" module="Persistence.mapping"/>
</pickle>
<pickle>
<dictionary>
<item>
<key> <string>data</string> </key>
<value>
<dictionary/>
</value>
</item>
</dictionary>
</pickle>
</record>
<record id="3" aka="AAAAAAAAAAM=">
<pickle>
<global name="PersistentMapping" module="Persistence.mapping"/>
</pickle>
<pickle>
<dictionary>
<item>
<key> <string>data</string> </key>
<value>
<dictionary>
<item>
<key> <string>component_validation_workflow</string> </key>
<value>
<persistent> <string encoding="base64">AAAAAAAAAAQ=</string> </persistent>
</value>
</item>
</dictionary>
</value>
</item>
</dictionary>
</pickle>
</record>
<record id="4" aka="AAAAAAAAAAQ=">
<pickle>
<global name="WorkflowHistoryList" module="Products.ERP5Type.patches.WorkflowTool"/>
</pickle>
<pickle>
<tuple>
<none/>
<list>
<dictionary>
<item>
<key> <string>action</string> </key>
<value> <string>validate</string> </value>
</item>
<item>
<key> <string>validation_state</string> </key>
<value> <string>validated</string> </value>
</item>
</dictionary>
</list>
</tuple>
</pickle>
</record>
</ZopeData>
<local_roles_item>
<local_roles>
<role id='admin'>
<item>Auditor</item>
</role>
<role id='contributor'>
<item>Auditor</item>
</role>
<role id='downloader'>
<item>Auditor</item>
</role>
</local_roles>
</local_roles_item>
\ No newline at end of file
<local_roles_item>
<local_roles>
<role id='admin'>
<item>Auditor</item>
</role>
<role id='contributor'>
<item>Auditor</item>
</role>
<role id='downloader'>
<item>Auditor</item>
</role>
<role id='viewer'>
<item>Auditor</item>
</role>
</local_roles>
</local_roles_item>
\ No newline at end of file
<local_roles_item>
<local_roles>
<role id='admin'>
<item>Auditor</item>
</role>
<role id='contributor'>
<item>Auditor</item>
</role>
<role id='downloader'>
<item>Auditor</item>
</role>
<role id='viewer'>
<item>Auditor</item>
</role>
</local_roles>
</local_roles_item>
\ No newline at end of file
<local_roles_item>
<local_roles>
<role id='admin'>
<item>Manager</item>
<item>Auditor</item>
<item>Author</item>
</role>
<role id='contributor'>
<item>Manager</item>
<item>Auditor</item>
<item>Author</item>
</role>
<role id='downloader'>
<item>Auditor</item>
</role>
</local_roles>
</local_roles_item>
\ No newline at end of file
<local_roles_item>
<local_roles>
<role id='admin'>
<item>Auditor</item>
</role>
<role id='contributor'>
<item>Auditor</item>
</role>
</local_roles>
</local_roles_item>
\ No newline at end of file
<local_roles_item>
<local_roles>
<role id='admin'>
<item>Auditor</item>
<item>Author</item>
</role>
<role id='contributor'>
<item>Auditor</item>
<item>Author</item>
</role>
</local_roles>
</local_roles_item>
\ No newline at end of file
<local_roles_item>
<local_roles>
<role id='admin'>
<item>Auditor</item>
<item>Author</item>
</role>
<role id='contributor'>
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<key> <string>quantity</string> </key>
<value> <float>0.0</float> </value>
</item>
<item>
<key> <string>title</string> </key>
<value> <string>Transform FIF</string> </value>
</item>
</dictionary>
</pickle>
</record>
<record id="2" aka="AAAAAAAAAAI=">
<pickle>
<global name="PersistentMapping" module="Persistence.mapping"/>
</pickle>
<pickle>
<dictionary>
<item>
<key> <string>data</string> </key>
<value>
<dictionary/>
</value>
</item>
</dictionary>
</pickle>
</record>
<record id="3" aka="AAAAAAAAAAM=">
<pickle>
<global name="PersistentMapping" module="Persistence.mapping"/>
</pickle>
<pickle>
<dictionary>
<item>
<key> <string>data</string> </key>
<value>
<dictionary/>
</value>
</item>
</dictionary>
</pickle>
</record>
</ZopeData>
<?xml version="1.0"?>
<ZopeData>
<record id="1" aka="AAAAAAAAAAE=">
<pickle>
<global name="Data Transformation Resource Line" module="erp5.portal_type"/>
</pickle>
<pickle>
<dictionary>
<item>
<key> <string>_identity_criterion</string> </key>
<value>
<persistent> <string encoding="base64">AAAAAAAAAAI=</string> </persistent>
</value>
</item>
<item>
<key> <string>_range_criterion</string> </key>
<value>
<persistent> <string encoding="base64">AAAAAAAAAAM=</string> </persistent>
</value>
</item>
<item>
<key> <string>categories</string> </key>
<value>
<tuple>
<string>resource/data_product_module/fif_data</string>
<string>quantity_unit/unit/piece</string>
</tuple>
</value>
</item>
<item>
<key> <string>default_reference</string> </key>
<value> <string>input_stream_data</string> </value>
</item>
<item>
<key> <string>description</string> </key>
<value>
<none/>
</value>
</item>
<item>
<key> <string>id</string> </key>
<value> <string>2</string> </value>
</item>
<item>
<key> <string>int_index</string> </key>
<value> <int>1</int> </value>
</item>
<item>
<key> <string>portal_type</string> </key>
<value> <string>Data Transformation Resource Line</string> </value>
</item>
<item>
<key> <string>quantity</string> </key>
<value> <float>-1.0</float> </value>
</item>
<item>
<key> <string>title</string> </key>
<value> <string>Input Stream Data</string> </value>
</item>
</dictionary>
</pickle>
</record>
<record id="2" aka="AAAAAAAAAAI=">
<pickle>
<global name="PersistentMapping" module="Persistence.mapping"/>
</pickle>
<pickle>
<dictionary>
<item>
<key> <string>data</string> </key>
<value>
<dictionary/>
</value>
</item>
</dictionary>
</pickle>
</record>
<record id="3" aka="AAAAAAAAAAM=">
<pickle>
<global name="PersistentMapping" module="Persistence.mapping"/>
</pickle>
<pickle>
<dictionary>
<item>
<key> <string>data</string> </key>
<value>
<dictionary/>
</value>
</item>
</dictionary>
</pickle>
</record>
</ZopeData>
<?xml version="1.0"?>
<ZopeData>
<record id="1" aka="AAAAAAAAAAE=">
<pickle>
<global name="Data Transformation Resource Line" module="erp5.portal_type"/>
</pickle>
<pickle>
<dictionary>
<item>
<key> <string>_identity_criterion</string> </key>
<value>
<persistent> <string encoding="base64">AAAAAAAAAAI=</string> </persistent>
</value>
</item>
<item>
<key> <string>_range_criterion</string> </key>
<value>
<persistent> <string encoding="base64">AAAAAAAAAAM=</string> </persistent>
</value>
</item>
<item>
<key> <string>categories</string> </key>
<value>
<tuple>
<string>resource/data_product_module/fif_array</string>
</tuple>
</value>
</item>
<item>
<key> <string>default_reference</string> </key>
<value> <string>output_array</string> </value>
</item>
<item>
<key> <string>description</string> </key>
<value>
<none/>
</value>
</item>
<item>
<key> <string>id</string> </key>
<value> <string>3</string> </value>
</item>
<item>
<key> <string>int_index</string> </key>
<value> <int>2</int> </value>
</item>
<item>
<key> <string>portal_type</string> </key>
<value> <string>Data Transformation Resource Line</string> </value>
</item>
<item>
<key> <string>quantity</string> </key>
<value> <float>1.0</float> </value>
</item>
<item>
<key> <string>title</string> </key>
<value> <string>Output Array</string> </value>
</item>
</dictionary>
</pickle>
</record>
<record id="2" aka="AAAAAAAAAAI=">
<pickle>
<global name="PersistentMapping" module="Persistence.mapping"/>
</pickle>
<pickle>
<dictionary>
<item>
<key> <string>data</string> </key>
<value>
<dictionary/>
</value>
</item>
</dictionary>
</pickle>
</record>
<record id="3" aka="AAAAAAAAAAM=">
<pickle>
<global name="PersistentMapping" module="Persistence.mapping"/>
</pickle>
<pickle>
<dictionary>
<item>
<key> <string>data</string> </key>
<value>
<dictionary/>
</value>
</item>
</dictionary>
</pickle>
</record>
</ZopeData>
<?xml version="1.0"?>
<ZopeData>
<record id="1" aka="AAAAAAAAAAE=">
<pickle>
<global name="Data Transformation Resource Line" module="erp5.portal_type"/>
</pickle>
<pickle>
<dictionary>
<item>
<key> <string>_identity_criterion</string> </key>
<value>
<persistent> <string encoding="base64">AAAAAAAAAAI=</string> </persistent>
</value>
</item>
<item>
<key> <string>_range_criterion</string> </key>
<value>
<persistent> <string encoding="base64">AAAAAAAAAAM=</string> </persistent>
</value>
</item>
<item>
<key> <string>categories</string> </key>
<value>
<tuple>
<string>resource/data_product_module/fif_descriptor</string>
</tuple>
</value>
</item>
<item>
<key> <string>default_reference</string> </key>
<value> <string>output_descriptor</string> </value>
</item>
<item>
<key> <string>description</string> </key>
<value>
<none/>
</value>
</item>
<item>
<key> <string>id</string> </key>
<value> <string>4</string> </value>
</item>
<item>
<key> <string>int_index</string> </key>
<value> <int>3</int> </value>
</item>
<item>
<key> <string>portal_type</string> </key>
<value> <string>Data Transformation Resource Line</string> </value>
</item>
<item>
<key> <string>quantity</string> </key>
<value> <float>1.0</float> </value>
</item>
<item>
<key> <string>title</string> </key>
<value> <string>Output Descriptor</string> </value>
</item>
</dictionary>
</pickle>
</record>
<record id="2" aka="AAAAAAAAAAI=">
<pickle>
<global name="PersistentMapping" module="Persistence.mapping"/>
</pickle>
<pickle>
<dictionary>
<item>
<key> <string>data</string> </key>
<value>
<dictionary/>
</value>
</item>
</dictionary>
</pickle>
</record>
<record id="3" aka="AAAAAAAAAAM=">
<pickle>
<global name="PersistentMapping" module="Persistence.mapping"/>
</pickle>
<pickle>
<dictionary>
<item>
<key> <string>data</string> </key>
<value>
<dictionary/>
</value>
</item>
</dictionary>
</pickle>
</record>
</ZopeData>
<?xml version="1.0"?>
<ZopeData>
<record id="1" aka="AAAAAAAAAAE=">
<pickle>
<global name="PyData Script" module="erp5.portal_type"/>
</pickle>
<pickle>
<dictionary>
<item>
<key> <string>Script_magic</string> </key>
<value> <int>3</int> </value>
</item>
<item>
<key> <string>_bind_names</string> </key>
<value>
<object>
<klass>
<global name="NameAssignments" module="Shared.DC.Scripts.Bindings"/>
</klass>
<tuple/>
<state>
<dictionary>
<item>
<key> <string>_asgns</string> </key>
<value>
<dictionary>
<item>
<key> <string>name_container</string> </key>
<value> <string>container</string> </value>
</item>
<item>
<key> <string>name_context</string> </key>
<value> <string>context</string> </value>
</item>
<item>
<key> <string>name_m_self</string> </key>
<value> <string>script</string> </value>
</item>
<item>
<key> <string>name_subpath</string> </key>
<value> <string>traverse_subpath</string> </value>
</item>
</dictionary>
</value>
</item>
</dictionary>
</state>
</object>
</value>
</item>
<item>
<key> <string>_local_properties</string> </key>
<value>
<tuple>
<dictionary>
<item>
<key> <string>id</string> </key>
<value> <string>reference</string> </value>
</item>
<item>
<key> <string>type</string> </key>
<value> <string>string</string> </value>
</item>
</dictionary>
</tuple>
</value>
</item>
<item>
<key> <string>_params</string> </key>
<value> <string>data_chunk=None, data_stream=None</string> </value>
</item>
<item>
<key> <string>description</string> </key>
<value> <string>Ingestion operation script to be used with Embulk Input: append given data chunk to given data stream</string> </value>
</item>
<item>
<key> <string>id</string> </key>
<value> <string>DataIngestionLine_writeEmbulkIngestionToDataStream</string> </value>
</item>
<item>
<key> <string>portal_type</string> </key>
<value> <string>PyData Script</string> </value>
</item>
<item>
<key> <string>reference</string> </key>
<value> <string>DataIngestionLine_writeEmbulkIngestionToDataStream</string> </value>
</item>
</dictionary>
</pickle>
</record>
</ZopeData>
portal = context.getPortalObject()
reference_separator = portal.getIngestionReferenceDictionary()["reference_separator"]
reference_extension = input_stream_data.getReference().split(reference_separator)[-1]
result = str(context.processRawData(input_stream_data, output_array, output_descriptor, reference_extension))
<?xml version="1.0"?>
<ZopeData>
<record id="1" aka="AAAAAAAAAAE=">
<pickle>
<global name="PyData Script" module="erp5.portal_type"/>
</pickle>
<pickle>
<dictionary>
<item>
<key> <string>Script_magic</string> </key>
<value> <int>3</int> </value>
</item>
<item>
<key> <string>_bind_names</string> </key>
<value>
<object>
<klass>
<global name="NameAssignments" module="Shared.DC.Scripts.Bindings"/>
</klass>
<tuple/>
<state>
<dictionary>
<item>
<key> <string>_asgns</string> </key>
<value>
<dictionary>
<item>
<key> <string>name_container</string> </key>
<value> <string>container</string> </value>
</item>
<item>
<key> <string>name_context</string> </key>
<value> <string>context</string> </value>
</item>
<item>
<key> <string>name_m_self</string> </key>
<value> <string>script</string> </value>
</item>
<item>
<key> <string>name_subpath</string> </key>
<value> <string>traverse_subpath</string> </value>
</item>
</dictionary>
</value>
</item>
</dictionary>
</state>
</object>
</value>
</item>
<item>
<key> <string>_local_properties</string> </key>
<value>
<tuple>
<dictionary>
<item>
<key> <string>id</string> </key>
<value> <string>reference</string> </value>
</item>
<item>
<key> <string>type</string> </key>
<value> <string>string</string> </value>
</item>
</dictionary>
</tuple>
</value>
</item>
<item>
<key> <string>_params</string> </key>
<value> <string>input_stream_data, output_array, output_descriptor</string> </value>
</item>
<item>
<key> <string>description</string> </key>
<value>
<none/>
</value>
</item>
<item>
<key> <string>id</string> </key>
<value> <string>DataTransformation_transformFIFDataToDataArray</string> </value>
</item>
<item>
<key> <string>portal_type</string> </key>
<value> <string>PyData Script</string> </value>
</item>
<item>
<key> <string>reference</string> </key>
<value> <string>DataTransformation_transformFIFDataToDataArray</string> </value>
</item>
</dictionary>
</pickle>
</record>
</ZopeData>
portal = context.getPortalObject()
reference_separator = portal.getIngestionReferenceDictionary()["reference_separator"]
reference_length = portal.getIngestionReferenceDictionary()["reference_length"]
invalid_chars = portal.getIngestionReferenceDictionary()["invalid_chars"]
record = reference.rsplit(reference_separator)
length = len(record)
if (length < reference_length):
context.logEntry("[ERROR] In HandleFifEmbulkIngestion: Data Ingestion reference is not well formated")
raise ValueError("Data Ingestion reference is not well formated.")
for char in invalid_chars:
if char in reference:
context.logEntry("[ERROR] In HandleFifEmbulkIngestion: Data Ingestion reference contains chars that are not allowed")
raise ValueError("Data Ingestion reference contains chars that are not allowed.")
supplier = record[0]
dataset_reference = record[1]
filename = reference_separator.join(record[2:-4])
extension = record[length-4]
eof = record[length-3]
size = record[length-2]
hash = record[length-1]
dict = { 'filename': filename,
'extension': extension,
'eof': eof,
'supplier': supplier,
'dataset_reference': dataset_reference,
'resource_reference': 'fif',
'size': size,
'hash': hash
}
return dict
<?xml version="1.0"?>
<ZopeData>
<record id="1" aka="AAAAAAAAAAE=">
<pickle>
<global name="PyData Script" module="erp5.portal_type"/>
</pickle>
<pickle>
<dictionary>
<item>
<key> <string>Script_magic</string> </key>
<value> <int>3</int> </value>
</item>
<item>
<key> <string>_bind_names</string> </key>
<value>
<object>
<klass>
<global name="NameAssignments" module="Shared.DC.Scripts.Bindings"/>
</klass>
<tuple/>
<state>
<dictionary>
<item>
<key> <string>_asgns</string> </key>
<value>
<dictionary>
<item>
<key> <string>name_container</string> </key>
<value> <string>container</string> </value>
</item>
<item>
<key> <string>name_context</string> </key>
<value> <string>context</string> </value>
</item>
<item>
<key> <string>name_m_self</string> </key>
<value> <string>script</string> </value>
</item>
<item>
<key> <string>name_subpath</string> </key>
<value> <string>traverse_subpath</string> </value>
</item>
</dictionary>
</value>
</item>
</dictionary>
</state>
</object>
</value>
</item>
<item>
<key> <string>_local_properties</string> </key>
<value>
<tuple>
<dictionary>
<item>
<key> <string>id</string> </key>
<value> <string>reference</string> </value>
</item>
<item>
<key> <string>type</string> </key>
<value> <string>string</string> </value>
</item>
</dictionary>
</tuple>
</value>
</item>
<item>
<key> <string>_params</string> </key>
<value> <string>reference</string> </value>
</item>
<item>
<key> <string>description</string> </key>
<value> <string>Handles the ingestion and returns the dictionary with the corresponding references.</string> </value>
</item>
<item>
<key> <string>id</string> </key>
<value> <string>HandleFifEmbulkIngestion</string> </value>
</item>
<item>
<key> <string>portal_type</string> </key>
<value> <string>PyData Script</string> </value>
</item>
<item>
<key> <string>reference</string> </key>
<value> <string>HandleFifEmbulkIngestion</string> </value>
</item>
<item>
<key> <string>title</string> </key>
<value> <string>Handle Fif Embulk Ingestion</string> </value>
</item>
</dictionary>
</pickle>
</record>
</ZopeData>
<?xml version="1.0"?>
<ZopeData>
<record id="1" aka="AAAAAAAAAAE=">
<pickle>
<global name="Category" module="erp5.portal_type"/>
</pickle>
<pickle>
<dictionary>
<item>
<key> <string>_Add_portal_content_Permission</string> </key>
<value>
<tuple>
<string>Assignor</string>
<string>Manager</string>
</tuple>
</value>
</item>
<item>
<key> <string>_Add_portal_folders_Permission</string> </key>
<value>
<tuple>
<string>Assignor</string>
<string>Manager</string>
</tuple>
</value>
</item>
<item>
<key> <string>_Copy_or_Move_Permission</string> </key>
<value>
<tuple>
<string>Assignor</string>
<string>Manager</string>
</tuple>
</value>
</item>
<item>
<key> <string>_Delete_objects_Permission</string> </key>
<value>
<tuple>
<string>Assignor</string>
<string>Manager</string>
</tuple>
</value>
</item>
<item>
<key> <string>_Modify_portal_content_Permission</string> </key>
<value>
<tuple>
<string>Assignee</string>
<string>Assignor</string>
<string>Manager</string>
<string>Owner</string>
</tuple>
</value>
</item>
<item>
<key> <string>categories</string> </key>
<value>
<tuple>
<string>function/admin</string>
</tuple>
</value>
</item>
<item>
<key> <string>description</string> </key>
<value>
<none/>
</value>
</item>
<item>
<key> <string>id</string> </key>
<value> <string>admin</string> </value>
</item>
<item>
<key> <string>portal_type</string> </key>
<value> <string>Category</string> </value>
</item>
<item>
<key> <string>title</string> </key>
<value> <string>admin</string> </value>
</item>
<item>
<key> <string>workflow_history</string> </key>
<value>
<persistent> <string encoding="base64">AAAAAAAAAAI=</string> </persistent>
</value>
</item>
</dictionary>
</pickle>
</record>
<record id="2" aka="AAAAAAAAAAI=">
<pickle>
<global name="PersistentMapping" module="Persistence.mapping"/>
</pickle>
<pickle>
<dictionary>
<item>
<key> <string>data</string> </key>
<value>
<dictionary>
<item>
<key> <string>category_publication_workflow</string> </key>
<value>
<persistent> <string encoding="base64">AAAAAAAAAAM=</string> </persistent>
</value>
</item>
<item>
<key> <string>edit_workflow</string> </key>
<value>
<persistent> <string encoding="base64">AAAAAAAAAAQ=</string> </persistent>
</value>
</item>
</dictionary>
</value>
</item>
</dictionary>
</pickle>
</record>
<record id="3" aka="AAAAAAAAAAM=">
<pickle>
<global name="WorkflowHistoryList" module="Products.ERP5Type.patches.WorkflowTool"/>
</pickle>
<pickle>
<tuple>
<none/>
<list>
<dictionary>
<item>
<key> <string>action</string> </key>
<value>
<none/>
</value>
</item>
<item>
<key> <string>actor</string> </key>
<value> <string>zope</string> </value>
</item>
<item>
<key> <string>comment</string> </key>
<value> <string></string> </value>
</item>
<item>
<key> <string>error_message</string> </key>
<value> <string></string> </value>
</item>
<item>
<key> <string>time</string> </key>
<value>
<object>
<klass>
<global name="DateTime" module="DateTime.DateTime"/>
</klass>
<tuple>
<none/>
</tuple>
<state>
<tuple>
<float>1529054662.92</float>
<string>UTC</string>
</tuple>
</state>
</object>
</value>
</item>
<item>
<key> <string>validation_state</string> </key>
<value> <string>embedded</string> </value>
</item>
</dictionary>
</list>
</tuple>
</pickle>
</record>
<record id="4" aka="AAAAAAAAAAQ=">
<pickle>
<global name="WorkflowHistoryList" module="Products.ERP5Type.patches.WorkflowTool"/>
</pickle>
<pickle>
<tuple>
<none/>
<list>
<dictionary>
<item>
<key> <string>action</string> </key>
<value> <string>edit</string> </value>
</item>
<item>
<key> <string>actor</string> </key>
<value> <string>zope</string> </value>
</item>
<item>
<key> <string>comment</string> </key>
<value>
<none/>
</value>
</item>
<item>
<key> <string>error_message</string> </key>
<value> <string></string> </value>
</item>
<item>
<key> <string>serial</string> </key>
<value> <string>968.15316.53199.37495</string> </value>
</item>
<item>
<key> <string>state</string> </key>
<value> <string>current</string> </value>
</item>
<item>
<key> <string>time</string> </key>
<value>
<object>
<klass>
<global name="DateTime" module="DateTime.DateTime"/>
</klass>
<tuple>
<none/>
</tuple>
<state>
<tuple>
<float>1529054694.41</float>
<string>UTC</string>
</tuple>
</state>
</object>
</value>
</item>
</dictionary>
</list>
</tuple>
</pickle>
</record>
</ZopeData>
<?xml version="1.0"?>
<ZopeData>
<record id="1" aka="AAAAAAAAAAE=">
<pickle>
<global name="Category" module="erp5.portal_type"/>
</pickle>
<pickle>
<dictionary>
<item>
<key> <string>_Add_portal_content_Permission</string> </key>
<value>
<tuple>
<string>Assignor</string>
<string>Manager</string>
</tuple>
</value>
</item>
<item>
<key> <string>_Add_portal_folders_Permission</string> </key>
<value>
<tuple>
<string>Assignor</string>
<string>Manager</string>
</tuple>
</value>
</item>
<item>
<key> <string>_Copy_or_Move_Permission</string> </key>
<value>
<tuple>
<string>Assignor</string>
<string>Manager</string>
</tuple>
</value>
</item>
<item>
<key> <string>_Delete_objects_Permission</string> </key>
<value>
<tuple>
<string>Assignor</string>
<string>Manager</string>
</tuple>
</value>
</item>
<item>
<key> <string>_Modify_portal_content_Permission</string> </key>
<value>
<tuple>
<string>Assignee</string>
<string>Assignor</string>
<string>Manager</string>
<string>Owner</string>
</tuple>
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\ No newline at end of file
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\ No newline at end of file
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\ No newline at end of file
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\ No newline at end of file
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\ No newline at end of file
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