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Gwenaël Samain
cython
Commits
68e1429c
Commit
68e1429c
authored
Jul 18, 2008
by
Dag Sverre Seljebotn
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Plain Diff
Introduced BufferType, start of numpy-independent testcase, GetBuffer improvements
parent
1139758c
Changes
6
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Showing
6 changed files
with
134 additions
and
31 deletions
+134
-31
Cython/Compiler/Buffer.py
Cython/Compiler/Buffer.py
+8
-5
Cython/Compiler/ExprNodes.py
Cython/Compiler/ExprNodes.py
+3
-3
Cython/Compiler/ModuleNode.py
Cython/Compiler/ModuleNode.py
+21
-4
Cython/Compiler/Nodes.py
Cython/Compiler/Nodes.py
+1
-2
Cython/Compiler/PyrexTypes.py
Cython/Compiler/PyrexTypes.py
+23
-17
tests/run/bufaccess.pyx
tests/run/bufaccess.pyx
+78
-0
No files found.
Cython/Compiler/Buffer.py
View file @
68e1429c
...
...
@@ -9,6 +9,8 @@ import PyrexTypes
from
sets
import
Set
as
set
class
PureCFuncNode
(
Node
):
child_attrs
=
[]
def
__init__
(
self
,
pos
,
cname
,
type
,
c_code
,
visibility
=
'private'
):
self
.
pos
=
pos
self
.
cname
=
cname
...
...
@@ -97,14 +99,14 @@ class BufferTransform(CythonTransform):
# on the buffer entry
bufvars
=
[(
name
,
entry
)
for
name
,
entry
in
scope
.
entries
.
iteritems
()
if
entry
.
type
.
buffer_options
is
not
None
]
if
entry
.
type
.
is_buffer
]
for
name
,
entry
in
bufvars
:
buf
opts
=
entry
.
type
.
buffer_options
buf
type
=
entry
.
type
# Get or make a type string checker
tschecker
=
self
.
tschecker
(
buf
opts
.
dtype
)
tschecker
=
self
.
tschecker
(
buf
type
.
dtype
)
# Declare auxiliary vars
bufinfo
=
scope
.
declare_var
(
temp_name_handle
(
u"%s_bufinfo"
%
name
),
...
...
@@ -116,7 +118,7 @@ class BufferTransform(CythonTransform):
stridevars
=
[]
shapevars
=
[]
for
idx
in
range
(
buf
opts
.
ndim
):
for
idx
in
range
(
buf
type
.
ndim
):
# stride
varname
=
temp_name_handle
(
u"%s_%s%d"
%
(
name
,
"stride"
,
idx
))
var
=
scope
.
declare_var
(
varname
,
PyrexTypes
.
c_int_type
,
node
.
pos
,
is_cdef
=
True
)
...
...
@@ -216,7 +218,7 @@ class BufferTransform(CythonTransform):
expr
=
AddNode
(
pos
,
operator
=
'+'
,
operand1
=
expr
,
operand2
=
next
)
casted
=
TypecastNode
(
pos
,
operand
=
expr
,
type
=
PyrexTypes
.
c_ptr_type
(
node
.
base
.
entry
.
type
.
buffer_options
.
dtype
))
type
=
PyrexTypes
.
c_ptr_type
(
node
.
base
.
entry
.
type
.
dtype
))
result
=
IndexNode
(
pos
,
base
=
casted
,
index
=
IntNode
(
pos
,
value
=
'0'
))
return
result
...
...
@@ -412,3 +414,4 @@ class BufferTransform(CythonTransform):
# TODO:
# - buf must be NULL before getting new buffer
Cython/Compiler/ExprNodes.py
View file @
68e1429c
...
...
@@ -1302,12 +1302,12 @@ class IndexNode(ExprNode):
skip_child_analysis
=
False
buffer_access
=
False
if
self
.
base
.
type
.
buffer_options
is
not
None
:
if
self
.
base
.
type
.
is_buffer
:
if
isinstance
(
self
.
index
,
TupleNode
):
indices
=
self
.
index
.
args
else
:
indices
=
[
self
.
index
]
if
len
(
indices
)
==
self
.
base
.
type
.
buffer_options
.
ndim
:
if
len
(
indices
)
==
self
.
base
.
type
.
ndim
:
buffer_access
=
True
skip_child_analysis
=
True
for
x
in
indices
:
...
...
@@ -1320,7 +1320,7 @@ class IndexNode(ExprNode):
# for x in indices]
self
.
indices
=
indices
self
.
index
=
None
self
.
type
=
self
.
base
.
type
.
buffer_options
.
dtype
self
.
type
=
self
.
base
.
type
.
dtype
self
.
is_temp
=
1
self
.
is_buffer_access
=
True
...
...
Cython/Compiler/ModuleNode.py
View file @
68e1429c
...
...
@@ -2002,9 +2002,25 @@ static void numpy_releasebuffer(PyObject *obj, Py_buffer *view) {
"""
)
except
KeyError
:
pass
# Search all types for __getbuffer__ overloads
types
=
[]
def
find_buffer_types
(
scope
):
for
m
in
scope
.
cimported_modules
:
find_buffer_types
(
m
)
for
e
in
scope
.
type_entries
:
t
=
e
.
type
if
t
.
is_extension_type
:
release
=
get
=
None
for
x
in
t
.
scope
.
pyfunc_entries
:
if
x
.
name
==
u"__getbuffer__"
:
get
=
x
.
func_cname
elif
x
.
name
==
u"__releasebuffer__"
:
release
=
x
.
func_cname
if
get
:
types
.
append
((
t
.
typeptr_cname
,
get
,
release
))
find_buffer_types
(
self
.
scope
)
# For now, hard-code numpy imported as "numpy"
types
=
[]
try
:
ndarrtype
=
env
.
entries
[
u'numpy'
].
as_module
.
entries
[
'ndarray'
].
type
types
.
append
((
ndarrtype
.
typeptr_cname
,
"numpy_getbuffer"
,
"numpy_releasebuffer"
))
...
...
@@ -2015,7 +2031,7 @@ static void numpy_releasebuffer(PyObject *obj, Py_buffer *view) {
if
len
(
types
)
>
0
:
clause
=
"if"
for
t
,
get
,
release
in
types
:
code
.
putln
(
"%s (
__Pyx_TypeTest
(obj, %s)) return %s(obj, view, flags);"
%
(
clause
,
t
,
get
))
code
.
putln
(
"%s (
PyObject_TypeCheck
(obj, %s)) return %s(obj, view, flags);"
%
(
clause
,
t
,
get
))
clause
=
"else if"
code
.
putln
(
"else {"
)
code
.
putln
(
"PyErr_Format(PyExc_TypeError,
\
"
'%100s' does not have the buffer interface
\
"
, Py_TYPE(obj)->tp_name);"
)
...
...
@@ -2027,8 +2043,9 @@ static void numpy_releasebuffer(PyObject *obj, Py_buffer *view) {
if
len
(
types
)
>
0
:
clause
=
"if"
for
t
,
get
,
release
in
types
:
code
.
putln
(
"%s (__Pyx_TypeTest(obj, %s)) %s(obj, view);"
%
(
clause
,
t
,
release
))
clause
=
"else if"
if
release
:
code
.
putln
(
"%s (PyObject_TypeCheck(obj, %s)) %s(obj, view);"
%
(
clause
,
t
,
release
))
clause
=
"else if"
code
.
putln
(
"}"
)
code
.
putln
(
""
)
code
.
putln
(
"#endif"
)
...
...
Cython/Compiler/Nodes.py
View file @
68e1429c
...
...
@@ -627,8 +627,7 @@ class CBufferAccessTypeNode(Node):
def
analyse
(
self
,
env
):
base_type
=
self
.
base_type_node
.
analyse
(
env
)
dtype
=
self
.
dtype_node
.
analyse
(
env
)
options
=
PyrexTypes
.
BufferOptions
(
dtype
=
dtype
,
ndim
=
self
.
ndim
)
self
.
type
=
PyrexTypes
.
create_buffer_type
(
base_type
,
options
)
self
.
type
=
PyrexTypes
.
BufferType
(
base_type
,
dtype
=
dtype
,
ndim
=
self
.
ndim
)
return
self
.
type
class
CComplexBaseTypeNode
(
CBaseTypeNode
):
...
...
Cython/Compiler/PyrexTypes.py
View file @
68e1429c
...
...
@@ -6,21 +6,6 @@ from Cython import Utils
import
Naming
import
copy
class
BufferOptions
:
# dtype PyrexType
# ndim int
def
__init__
(
self
,
dtype
,
ndim
):
self
.
dtype
=
dtype
self
.
ndim
=
ndim
def
create_buffer_type
(
base_type
,
buffer_options
):
# Make a shallow copy of base_type and then annotate it
# with the buffer information
result
=
copy
.
copy
(
base_type
)
result
.
buffer_options
=
buffer_options
return
result
class
BaseType
:
#
...
...
@@ -57,6 +42,7 @@ class PyrexType(BaseType):
# is_unicode boolean Is a UTF-8 encoded C char * type
# is_returncode boolean Is used only to signal exceptions
# is_error boolean Is the dummy error type
# is_buffer boolean Is buffer access type
# has_attributes boolean Has C dot-selectable attributes
# default_value string Initial value
# parsetuple_format string Format char for PyArg_ParseTuple
...
...
@@ -106,11 +92,11 @@ class PyrexType(BaseType):
is_unicode
=
0
is_returncode
=
0
is_error
=
0
is_buffer
=
0
has_attributes
=
0
default_value
=
""
parsetuple_format
=
""
pymemberdef_typecode
=
None
buffer_options
=
None
# can contain a BufferOptions instance
def
resolve
(
self
):
# If a typedef, returns the base type.
...
...
@@ -202,6 +188,26 @@ class CTypedefType(BaseType):
def
__getattr__
(
self
,
name
):
return
getattr
(
self
.
typedef_base_type
,
name
)
class
BufferType
(
BaseType
):
#
# Delegates most attribute
# lookups to the base type. ANYTHING NOT DEFINED
# HERE IS DELEGATED!
# dtype PyrexType
# ndim int
is_buffer
=
1
def
__init__
(
self
,
base
,
dtype
,
ndim
):
self
.
base
=
base
self
.
dtype
=
dtype
self
.
ndim
=
ndim
def
__getattr__
(
self
,
name
):
return
getattr
(
self
.
base
,
name
)
class
PyObjectType
(
PyrexType
):
#
# Base class for all Python object types (reference-counted).
...
...
@@ -927,7 +933,7 @@ class CEnumType(CType):
# name string
# cname string or None
# typedef_flag boolean
is_enum
=
1
signed
=
1
rank
=
-
1
# Ranks below any integer type
...
...
tests/run/bufaccess.pyx
0 → 100644
View file @
68e1429c
cimport
__cython__
__doc__
=
u"""
>>> fb = MockBuffer("=f", "f", [1.0, 1.25, 0.75, 1.0], (2,2))
>>> printbuf_float(fb, (2,2))
1.0 1.25
0.75 1.0
"""
def
printbuf_float
(
o
,
shape
):
# should make shape builtin
cdef
object
[
float
,
2
]
buf
buf
=
o
cdef
int
i
,
j
for
i
in
range
(
shape
[
0
]):
for
j
in
range
(
shape
[
1
]):
print
buf
[
i
,
j
],
print
sizes
=
{
'f'
:
sizeof
(
float
)
}
cimport
stdlib
cdef
class
MockBuffer
:
cdef
object
format
cdef
char
*
buffer
cdef
int
len
,
itemsize
,
ndim
cdef
Py_ssize_t
*
strides
cdef
Py_ssize_t
*
shape
def
__init__
(
self
,
format
,
typechar
,
data
,
shape
=
None
,
strides
=
None
):
self
.
itemsize
=
sizes
[
typechar
]
if
shape
is
None
:
shape
=
(
len
(
data
),)
if
strides
is
None
:
strides
=
[]
cumprod
=
1
for
s
in
shape
:
strides
.
append
(
cumprod
)
cumprod
*=
s
strides
.
reverse
()
strides
=
[
x
*
self
.
itemsize
for
x
in
strides
]
self
.
format
=
format
self
.
len
=
len
(
data
)
*
self
.
itemsize
self
.
buffer
=
<
char
*>
stdlib
.
malloc
(
self
.
len
)
self
.
fill_buffer
(
typechar
,
data
)
self
.
ndim
=
len
(
shape
)
self
.
strides
=
<
Py_ssize_t
*>
stdlib
.
malloc
(
self
.
ndim
*
sizeof
(
Py_ssize_t
))
for
i
,
x
in
enumerate
(
strides
):
self
.
strides
[
i
]
=
x
self
.
shape
=
<
Py_ssize_t
*>
stdlib
.
malloc
(
self
.
ndim
*
sizeof
(
Py_ssize_t
))
def
__getbuffer__
(
MockBuffer
self
,
Py_buffer
*
buffer
,
int
flags
):
if
buffer
is
NULL
:
print
u"locking!"
return
buffer
.
buf
=
self
.
buffer
buffer
.
len
=
self
.
len
buffer
.
readonly
=
0
buffer
.
format
=
<
char
*>
self
.
format
buffer
.
ndim
=
self
.
ndim
buffer
.
shape
=
self
.
shape
buffer
.
strides
=
self
.
strides
buffer
.
suboffsets
=
NULL
buffer
.
itemsize
=
self
.
itemsize
buffer
.
internal
=
NULL
cdef
fill_buffer
(
self
,
typechar
,
object
data
):
cdef
int
idx
=
0
for
value
in
data
:
(
<
float
*>
(
self
.
buffer
+
idx
))[
0
]
=
<
float
>
value
idx
+=
sizeof
(
float
)
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