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Gwenaël Samain
cython
Commits
6d41b480
Commit
6d41b480
authored
Sep 23, 2012
by
Mark Florisson
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Error checking for NULL strides + tests
parent
a6610e7a
Changes
2
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2 changed files
with
154 additions
and
34 deletions
+154
-34
Cython/Utility/MemoryView_C.c
Cython/Utility/MemoryView_C.c
+54
-34
tests/memoryview/numpy_memoryview.pyx
tests/memoryview/numpy_memoryview.pyx
+100
-0
No files found.
Cython/Utility/MemoryView_C.c
View file @
6d41b480
...
...
@@ -207,30 +207,48 @@ static int __Pyx_ValidateAndInit_memviewslice(
goto
fail
;
}
for
(
i
=
0
;
i
<
ndim
;
i
++
)
{
for
(
i
=
0
;
i
<
ndim
;
i
++
)
{
spec
=
axes_specs
[
i
];
if
(
spec
&
__Pyx_MEMVIEW_CONTIG
)
{
if
(
spec
&
(
__Pyx_MEMVIEW_PTR
|
__Pyx_MEMVIEW_FULL
))
{
if
(
buf
->
strides
[
i
]
!=
sizeof
(
void
*
))
{
PyErr_Format
(
PyExc_ValueError
,
"Buffer is not indirectly contiguous in dimension %d."
,
i
);
if
(
buf
->
strides
)
{
if
(
spec
&
__Pyx_MEMVIEW_CONTIG
)
{
if
(
spec
&
(
__Pyx_MEMVIEW_PTR
|
__Pyx_MEMVIEW_FULL
))
{
if
(
buf
->
strides
[
i
]
!=
sizeof
(
void
*
))
{
PyErr_Format
(
PyExc_ValueError
,
"Buffer is not indirectly contiguous in dimension %d."
,
i
);
goto
fail
;
}
}
else
if
(
buf
->
strides
[
i
]
!=
buf
->
itemsize
)
{
PyErr_SetString
(
PyExc_ValueError
,
"Buffer and memoryview are not contiguous in the same dimension."
);
goto
fail
;
}
}
else
if
(
buf
->
strides
[
i
]
!=
buf
->
itemsize
)
{
PyErr_SetString
(
PyExc_ValueError
,
"Buffer and memoryview are not contiguous in the same dimension."
);
goto
fail
;
}
}
if
(
spec
&
__Pyx_MEMVIEW_FOLLOW
)
{
Py_ssize_t
stride
=
buf
->
strides
[
i
];
if
(
stride
<
0
)
stride
=
-
stride
;
if
(
stride
<
buf
->
itemsize
)
{
if
(
spec
&
__Pyx_MEMVIEW_FOLLOW
)
{
Py_ssize_t
stride
=
buf
->
strides
[
i
];
if
(
stride
<
0
)
stride
=
-
stride
;
if
(
stride
<
buf
->
itemsize
)
{
PyErr_SetString
(
PyExc_ValueError
,
"Buffer and memoryview are not contiguous in the same dimension."
);
goto
fail
;
}
}
}
else
{
if
(
spec
&
__Pyx_MEMVIEW_CONTIG
&&
i
!=
ndim
-
1
)
{
PyErr_Format
(
PyExc_ValueError
,
"C-contiguous buffer is not contiguous in "
"dimension %d"
,
i
);
goto
fail
;
}
else
if
(
spec
&
(
__Pyx_MEMVIEW_PTR
))
{
PyErr_Format
(
PyExc_ValueError
,
"C-contiguous buffer is not indirect in "
"dimension %d"
,
i
);
goto
fail
;
}
else
if
(
buf
->
suboffsets
)
{
PyErr_SetString
(
PyExc_ValueError
,
"Buffer and memoryview are not contiguous in the same dimension.
"
);
"Buffer exposes suboffsets but no strides
"
);
goto
fail
;
}
}
...
...
@@ -254,25 +272,27 @@ static int __Pyx_ValidateAndInit_memviewslice(
}
}
if
(
c_or_f_flag
&
__Pyx_IS_F_CONTIG
)
{
Py_ssize_t
stride
=
1
;
for
(
i
=
0
;
i
<
ndim
;
i
++
)
{
if
(
stride
*
buf
->
itemsize
!=
buf
->
strides
[
i
])
{
PyErr_SetString
(
PyExc_ValueError
,
"Buffer not fortran contiguous."
);
goto
fail
;
if
(
buf
->
strides
)
{
if
(
c_or_f_flag
&
__Pyx_IS_F_CONTIG
)
{
Py_ssize_t
stride
=
1
;
for
(
i
=
0
;
i
<
ndim
;
i
++
)
{
if
(
stride
*
buf
->
itemsize
!=
buf
->
strides
[
i
])
{
PyErr_SetString
(
PyExc_ValueError
,
"Buffer not fortran contiguous."
);
goto
fail
;
}
stride
=
stride
*
buf
->
shape
[
i
];
}
stride
=
stride
*
buf
->
shape
[
i
];
}
}
else
if
(
c_or_f_flag
&
__Pyx_IS_C_CONTIG
)
{
Py_ssize_t
stride
=
1
;
for
(
i
=
ndim
-
1
;
i
>-
1
;
i
--
)
{
if
(
stride
*
buf
->
itemsize
!=
buf
->
strides
[
i
])
{
PyErr_SetString
(
PyExc_ValueError
,
"Buffer not C contiguous."
);
goto
fail
;
}
else
if
(
c_or_f_flag
&
__Pyx_IS_C_CONTIG
)
{
Py_ssize_t
stride
=
1
;
for
(
i
=
ndim
-
1
;
i
>-
1
;
i
--
)
{
if
(
stride
*
buf
->
itemsize
!=
buf
->
strides
[
i
])
{
PyErr_SetString
(
PyExc_ValueError
,
"Buffer not C contiguous."
);
goto
fail
;
}
stride
=
stride
*
buf
->
shape
[
i
]
;
}
stride
=
stride
*
buf
->
shape
[
i
];
}
}
...
...
tests/memoryview/numpy_memoryview.pyx
View file @
6d41b480
...
...
@@ -10,6 +10,7 @@ import sys
cimport
numpy
as
np
import
numpy
as
np
cimport
cython
from
cython
cimport
view
include
"cythonarrayutil.pxi"
include
"../buffers/mockbuffers.pxi"
...
...
@@ -568,3 +569,102 @@ def test_struct_attributes():
print
array
[
0
][
'attrib1'
]
print
array
[
0
][
'attrib2'
]
print
chr
(
array
[
0
][
'attrib3'
][
'c'
][
0
][
0
])
#
### Test for NULL strides (C contiguous buffers)
#
cdef
getbuffer
(
Buffer
self
,
Py_buffer
*
info
):
info
.
buf
=
&
self
.
m
[
0
,
0
]
info
.
len
=
10
*
20
info
.
ndim
=
2
info
.
shape
=
self
.
_shape
info
.
strides
=
NULL
info
.
suboffsets
=
NULL
info
.
itemsize
=
4
info
.
readonly
=
0
self
.
format
=
b"f"
info
.
format
=
self
.
format
cdef
class
Buffer
(
object
):
cdef
Py_ssize_t
_shape
[
2
]
cdef
bytes
format
cdef
float
[:,
:]
m
cdef
object
shape
,
strides
def
__init__
(
self
):
a
=
np
.
arange
(
200
,
dtype
=
np
.
float32
).
reshape
(
10
,
20
)
self
.
m
=
a
self
.
shape
=
a
.
shape
self
.
strides
=
a
.
strides
self
.
_shape
[
0
]
=
10
self
.
_shape
[
1
]
=
20
def
__getbuffer__
(
self
,
Py_buffer
*
info
,
int
flags
):
getbuffer
(
self
,
info
)
cdef
class
SuboffsetsNoStridesBuffer
(
Buffer
):
def
__getbuffer__
(
self
,
Py_buffer
*
info
,
int
flags
):
getbuffer
(
self
,
info
)
info
.
suboffsets
=
self
.
_shape
@
testcase
def
test_null_strides
(
Buffer
buffer_obj
):
"""
>>> test_null_strides(Buffer())
"""
cdef
float
[:,
:]
m1
=
buffer_obj
cdef
float
[:,
::
1
]
m2
=
buffer_obj
cdef
float
[:,
::
view
.
contiguous
]
m3
=
buffer_obj
assert
(
<
object
>
m1
).
strides
==
buffer_obj
.
strides
assert
(
<
object
>
m2
).
strides
==
buffer_obj
.
strides
,
((
<
object
>
m2
).
strides
,
buffer_obj
.
strides
)
assert
(
<
object
>
m3
).
strides
==
buffer_obj
.
strides
cdef
int
i
,
j
for
i
in
range
(
m1
.
shape
[
0
]):
for
j
in
range
(
m1
.
shape
[
1
]):
assert
m1
[
i
,
j
]
==
buffer_obj
.
m
[
i
,
j
]
assert
m2
[
i
,
j
]
==
buffer_obj
.
m
[
i
,
j
],
(
i
,
j
,
m2
[
i
,
j
],
buffer_obj
.
m
[
i
,
j
])
assert
m3
[
i
,
j
]
==
buffer_obj
.
m
[
i
,
j
]
@
testcase
def
test_null_strides_error
(
buffer_obj
):
"""
>>> test_null_strides_error(Buffer())
C-contiguous buffer is not indirect in dimension 1
C-contiguous buffer is not indirect in dimension 0
C-contiguous buffer is not contiguous in dimension 0
C-contiguous buffer is not contiguous in dimension 0
>>> test_null_strides_error(SuboffsetsNoStridesBuffer())
Traceback (most recent call last):
...
ValueError: Buffer exposes suboffsets but no strides
"""
# valid
cdef
float
[::
view
.
generic
,
::
view
.
generic
]
full_buf
=
buffer_obj
# invalid
cdef
float
[:,
::
view
.
indirect
]
indirect_buf1
cdef
float
[::
view
.
indirect
,
:]
indirect_buf2
cdef
float
[::
1
,
:]
fortran_buf1
cdef
float
[::
view
.
contiguous
,
:]
fortran_buf2
try
:
indirect_buf1
=
buffer_obj
except
ValueError
,
e
:
print
e
try
:
indirect_buf2
=
buffer_obj
except
ValueError
,
e
:
print
e
try
:
fortran_buf1
=
buffer_obj
except
ValueError
,
e
:
print
e
try
:
fortran_buf2
=
buffer_obj
except
ValueError
,
e
:
print
e
\ No newline at end of file
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