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Gwenaël Samain
cython
Commits
6dd63258
Commit
6dd63258
authored
Jul 26, 2015
by
Stefan Behnel
Browse files
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Browse Files
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Plain Diff
modernise demos and make them Py2/3 compatible
parent
9b925e03
Changes
15
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Side-by-side
Showing
15 changed files
with
82 additions
and
39 deletions
+82
-39
Demos/embed/assert_equal.py
Demos/embed/assert_equal.py
+5
-2
Demos/embed/embedded.pyx
Demos/embed/embedded.pyx
+4
-3
Demos/freeze/combinatorics.pyx
Demos/freeze/combinatorics.pyx
+9
-3
Demos/freeze/lcmath.pyx
Demos/freeze/lcmath.pyx
+6
-1
Demos/integrate1.pyx
Demos/integrate1.pyx
+3
-0
Demos/integrate2.pyx
Demos/integrate2.pyx
+3
-0
Demos/integrate_timing.py
Demos/integrate_timing.py
+5
-3
Demos/libraries/setup.py
Demos/libraries/setup.py
+3
-1
Demos/numpy_demo.pyx
Demos/numpy_demo.pyx
+3
-3
Demos/overflow_perf.pyx
Demos/overflow_perf.pyx
+10
-6
Demos/overflow_perf_run.py
Demos/overflow_perf_run.py
+11
-7
Demos/primes.pyx
Demos/primes.pyx
+7
-5
Demos/run_primes.py
Demos/run_primes.py
+5
-1
Demos/run_spam.py
Demos/run_spam.py
+4
-2
Demos/spam.pyx
Demos/spam.pyx
+4
-2
No files found.
Demos/embed/assert_equal.py
View file @
6dd63258
from
__future__
import
absolute_import
,
print_function
import
sys
import
sys
f1
=
open
(
sys
.
argv
[
1
])
f1
=
open
(
sys
.
argv
[
1
])
f2
=
open
(
sys
.
argv
[
2
])
f2
=
open
(
sys
.
argv
[
2
])
try
:
try
:
if
f1
.
read
()
!=
f2
.
read
():
if
f1
.
read
()
!=
f2
.
read
():
print
(
"Files differ"
)
print
(
"Files differ"
)
sys
.
exit
(
1
)
sys
.
exit
(
1
)
else
:
else
:
print
(
"Files identical"
)
print
(
"Files identical"
)
finally
:
finally
:
f1
.
close
()
f1
.
close
()
f2
.
close
()
f2
.
close
()
Demos/embed/embedded.pyx
View file @
6dd63258
# cython: language_level=3
print
__name__
print
(
__name__
)
if
__name__
==
"__main__"
:
if
__name__
==
"__main__"
:
print
"Hi, I'm embedded."
print
(
"Hi, I'm embedded."
)
else
:
else
:
print
"I'm being imported."
print
(
"I'm being imported."
)
Demos/freeze/combinatorics.pyx
View file @
6dd63258
# cython: language_level=3
import
lcmath
import
lcmath
def
nCr
(
n
,
r
):
def
nCr
(
n
,
r
):
"""Return the number of ways to choose r elements of a set of n."""
"""Return the number of ways to choose r elements of a set of n."""
return
lcmath
.
exp
(
lcmath
.
lfactorial
(
n
)
-
lcmath
.
lfactorial
(
r
)
return
lcmath
.
exp
(
-
lcmath
.
lfactorial
(
n
-
r
)
)
lcmath
.
lfactorial
(
n
)
-
lcmath
.
lfactorial
(
r
)
-
lcmath
.
lfactorial
(
n
-
r
)
)
if
__name__
==
"__main__"
:
if
__name__
==
"__main__"
:
import
sys
import
sys
...
@@ -11,4 +17,4 @@ if __name__ == "__main__":
...
@@ -11,4 +17,4 @@ if __name__ == "__main__":
sys
.
stderr
.
write
(
"USAGE: %s n r
\
n
Prints n-choose-r.
\
n
"
%
sys
.
argv
[
0
])
sys
.
stderr
.
write
(
"USAGE: %s n r
\
n
Prints n-choose-r.
\
n
"
%
sys
.
argv
[
0
])
sys
.
exit
(
2
)
sys
.
exit
(
2
)
n
,
r
=
map
(
float
,
sys
.
argv
[
1
:])
n
,
r
=
map
(
float
,
sys
.
argv
[
1
:])
print
nCr
(
n
,
r
)
print
(
nCr
(
n
,
r
)
)
Demos/freeze/lcmath.pyx
View file @
6dd63258
# cython: language_level=3
cdef
extern
from
"math.h"
:
cdef
extern
from
"math.h"
:
double
c_lgamma
"lgamma"
(
double
)
double
c_lgamma
"lgamma"
(
double
)
double
c_exp
"exp"
(
double
)
double
c_exp
"exp"
(
double
)
def
exp
(
n
):
def
exp
(
n
):
"""Return e**n."""
"""Return e**n."""
return
c_exp
(
n
)
return
c_exp
(
n
)
def
lfactorial
(
n
):
def
lfactorial
(
n
):
"""Return an estimate of the log factorial of n."""
"""Return an estimate of the log factorial of n."""
return
c_lgamma
(
n
+
1
)
return
c_lgamma
(
n
+
1
)
def
factorial
(
n
):
def
factorial
(
n
):
"""Return an estimate of the factorial of n."""
"""Return an estimate of the factorial of n."""
return
c_exp
(
c_lgamma
(
n
+
1
)
)
return
c_exp
(
c_lgamma
(
n
+
1
)
)
...
@@ -21,4 +26,4 @@ if __name__ == "__main__":
...
@@ -21,4 +26,4 @@ if __name__ == "__main__":
sys
.
stderr
.
write
(
"USAGE: %s n
\
n
Prints n!.
\
n
"
%
sys
.
argv
[
0
])
sys
.
stderr
.
write
(
"USAGE: %s n
\
n
Prints n!.
\
n
"
%
sys
.
argv
[
0
])
sys
.
exit
(
2
)
sys
.
exit
(
2
)
n
,
=
map
(
float
,
sys
.
argv
[
1
:])
n
,
=
map
(
float
,
sys
.
argv
[
1
:])
print
factorial
(
n
)
print
(
factorial
(
n
)
)
Demos/integrate1.pyx
View file @
6dd63258
# cython: language_level=3
def
f
(
x
):
def
f
(
x
):
return
x
**
2
-
x
return
x
**
2
-
x
def
integrate_f
(
a
,
b
,
N
):
def
integrate_f
(
a
,
b
,
N
):
s
=
0.0
s
=
0.0
dx
=
(
b
-
a
)
/
N
dx
=
(
b
-
a
)
/
N
...
...
Demos/integrate2.pyx
View file @
6dd63258
# cython: language_level=3
cdef
double
f
(
double
x
)
except
?
-
2
:
cdef
double
f
(
double
x
)
except
?
-
2
:
return
x
**
2
-
x
return
x
**
2
-
x
def
integrate_f
(
double
a
,
double
b
,
int
N
):
def
integrate_f
(
double
a
,
double
b
,
int
N
):
cdef
int
i
cdef
int
i
s
=
0.0
s
=
0.0
...
...
Demos/integrate_timing.py
View file @
6dd63258
from
__future__
import
absolute_import
,
print_function
import
timeit
import
timeit
import
integrate0
,
integrate1
,
integrate2
import
integrate0
,
integrate1
,
integrate2
...
@@ -5,9 +7,9 @@ import integrate0, integrate1, integrate2
...
@@ -5,9 +7,9 @@ import integrate0, integrate1, integrate2
number
=
10
number
=
10
py_time
=
None
py_time
=
None
for
m
in
(
'integrate0'
,
'integrate1'
,
'integrate2'
):
for
m
in
(
'integrate0'
,
'integrate1'
,
'integrate2'
):
print
m
print
(
m
)
t
=
min
(
timeit
.
repeat
(
"integrate_f(0.0, 10.0, 10000000)"
,
"from %s import integrate_f"
%
m
,
number
=
number
))
t
=
min
(
timeit
.
repeat
(
"integrate_f(0.0, 10.0, 10000000)"
,
"from %s import integrate_f"
%
m
,
number
=
number
))
if
py_time
is
None
:
if
py_time
is
None
:
py_time
=
t
py_time
=
t
print
" "
,
t
/
number
,
"s"
print
(
" "
,
t
/
number
,
"s"
)
print
" "
,
py_time
/
t
print
(
" "
,
py_time
/
t
)
Demos/libraries/setup.py
View file @
6dd63258
from
__future__
import
absolute_import
,
print_function
import
os
import
os
import
sys
import
sys
...
@@ -8,7 +10,7 @@ from Cython.Build import cythonize
...
@@ -8,7 +10,7 @@ from Cython.Build import cythonize
# For demo purposes, we build our own tiny library.
# For demo purposes, we build our own tiny library.
try
:
try
:
print
"building libmymath.a"
print
(
"building libmymath.a"
)
assert
os
.
system
(
"gcc -shared -fPIC -c mymath.c -o mymath.o"
)
==
0
assert
os
.
system
(
"gcc -shared -fPIC -c mymath.c -o mymath.o"
)
==
0
assert
os
.
system
(
"ar rcs libmymath.a mymath.o"
)
==
0
assert
os
.
system
(
"ar rcs libmymath.a mymath.o"
)
==
0
except
:
except
:
...
...
Demos/numpy_demo.pyx
View file @
6dd63258
cimport
numpy
cimport
numpy
as
cnp
import
numpy
def
sum_of_squares
(
numpy
.
ndarray
[
double
,
ndim
=
1
]
arr
):
def
sum_of_squares
(
cnp
.
ndarray
[
double
,
ndim
=
1
]
arr
):
cdef
long
N
=
arr
.
shape
[
0
]
cdef
long
N
=
arr
.
shape
[
0
]
cdef
double
ss
=
0
cdef
double
ss
=
0
for
i
in
range
(
N
):
for
i
in
range
(
N
):
...
...
Demos/overflow_perf.pyx
View file @
6dd63258
# cython: language_level=3
# distutils: extra_compile_args = -O3
# distutils: extra_compile_args = -O3
import
cython
c
import
cython
ctypedef
fused
INT
:
ctypedef
fused
INT
:
int
int
...
@@ -15,6 +16,7 @@ ctypedef fused C_INT:
...
@@ -15,6 +16,7 @@ ctypedef fused C_INT:
unsigned
int
unsigned
int
unsigned
long
long
unsigned
long
long
@
cython
.
overflowcheck
(
False
)
@
cython
.
overflowcheck
(
False
)
def
fib
(
INT
n
):
def
fib
(
INT
n
):
"""
"""
...
@@ -54,12 +56,13 @@ def collatz(INT n):
...
@@ -54,12 +56,13 @@ def collatz(INT n):
cdef
INT
k
=
0
cdef
INT
k
=
0
while
n
!=
1
:
while
n
!=
1
:
if
n
%
2
==
0
:
if
n
%
2
==
0
:
n
/=
2
n
/
/
=
2
else
:
else
:
n
=
3
*
n
+
1
n
=
3
*
n
+
1
k
+=
1
k
+=
1
return
int
(
k
)
return
int
(
k
)
@
cython
.
overflowcheck
(
True
)
@
cython
.
overflowcheck
(
True
)
@
cython
.
overflowcheck
.
fold
(
False
)
@
cython
.
overflowcheck
.
fold
(
False
)
def
collatz_overflow
(
INT
n
):
def
collatz_overflow
(
INT
n
):
...
@@ -74,12 +77,13 @@ def collatz_overflow(INT n):
...
@@ -74,12 +77,13 @@ def collatz_overflow(INT n):
cdef
INT
k
=
0
cdef
INT
k
=
0
while
n
!=
1
:
while
n
!=
1
:
if
n
%
2
==
0
:
if
n
%
2
==
0
:
n
/=
2
n
/
/
=
2
else
:
else
:
n
=
3
*
n
+
1
n
=
3
*
n
+
1
k
+=
1
k
+=
1
return
int
(
k
)
return
int
(
k
)
@
cython
.
overflowcheck
(
True
)
@
cython
.
overflowcheck
(
True
)
@
cython
.
overflowcheck
.
fold
(
True
)
@
cython
.
overflowcheck
.
fold
(
True
)
def
collatz_overflow_fold
(
INT
n
):
def
collatz_overflow_fold
(
INT
n
):
...
@@ -94,14 +98,13 @@ def collatz_overflow_fold(INT n):
...
@@ -94,14 +98,13 @@ def collatz_overflow_fold(INT n):
cdef
INT
k
=
0
cdef
INT
k
=
0
while
n
!=
1
:
while
n
!=
1
:
if
n
%
2
==
0
:
if
n
%
2
==
0
:
n
/=
2
n
/
/
=
2
else
:
else
:
n
=
3
*
n
+
1
n
=
3
*
n
+
1
k
+=
1
k
+=
1
return
int
(
k
)
return
int
(
k
)
@
cython
.
overflowcheck
(
False
)
@
cython
.
overflowcheck
(
False
)
def
factorial
(
INT
n
):
def
factorial
(
INT
n
):
"""
"""
...
@@ -129,7 +132,6 @@ def factorial_overflow(INT n):
...
@@ -129,7 +132,6 @@ def factorial_overflow(INT n):
return
int
(
res
)
return
int
(
res
)
@
cython
.
overflowcheck
(
False
)
@
cython
.
overflowcheck
(
False
)
def
most_orthogonal
(
C_INT
[:,::
1
]
vectors
):
def
most_orthogonal
(
C_INT
[:,::
1
]
vectors
):
cdef
C_INT
n
=
vectors
.
shape
[
0
]
cdef
C_INT
n
=
vectors
.
shape
[
0
]
...
@@ -148,6 +150,7 @@ def most_orthogonal(C_INT[:,::1] vectors):
...
@@ -148,6 +150,7 @@ def most_orthogonal(C_INT[:,::1] vectors):
min_pair
=
i
,
j
min_pair
=
i
,
j
return
vectors
[
i
],
vectors
[
j
]
return
vectors
[
i
],
vectors
[
j
]
@
cython
.
overflowcheck
(
True
)
@
cython
.
overflowcheck
(
True
)
@
cython
.
overflowcheck
.
fold
(
False
)
@
cython
.
overflowcheck
.
fold
(
False
)
def
most_orthogonal_overflow
(
C_INT
[:,::
1
]
vectors
):
def
most_orthogonal_overflow
(
C_INT
[:,::
1
]
vectors
):
...
@@ -167,6 +170,7 @@ def most_orthogonal_overflow(C_INT[:,::1] vectors):
...
@@ -167,6 +170,7 @@ def most_orthogonal_overflow(C_INT[:,::1] vectors):
min_pair
=
i
,
j
min_pair
=
i
,
j
return
vectors
[
i
],
vectors
[
j
]
return
vectors
[
i
],
vectors
[
j
]
@
cython
.
overflowcheck
(
True
)
@
cython
.
overflowcheck
(
True
)
@
cython
.
overflowcheck
.
fold
(
True
)
@
cython
.
overflowcheck
.
fold
(
True
)
def
most_orthogonal_overflow_fold
(
C_INT
[:,::
1
]
vectors
):
def
most_orthogonal_overflow_fold
(
C_INT
[:,::
1
]
vectors
):
...
...
Demos/overflow_perf_run.py
View file @
6dd63258
from
__future__
import
absolute_import
,
print_function
from
overflow_perf
import
*
from
overflow_perf
import
*
import
sys
import
sys
...
@@ -11,7 +13,7 @@ except ImportError:
...
@@ -11,7 +13,7 @@ except ImportError:
def
run_tests
(
N
):
def
run_tests
(
N
):
global
f
global
f
for
func
in
most_orthogonal
,
fib
,
collatz
,
factorial
:
for
func
in
most_orthogonal
,
fib
,
collatz
,
factorial
:
print
func
.
__name__
print
(
func
.
__name__
)
for
type
in
[
'int'
,
'unsigned int'
,
'long long'
,
'unsigned long long'
,
'object'
]:
for
type
in
[
'int'
,
'unsigned int'
,
'long long'
,
'unsigned long long'
,
'object'
]:
if
func
==
most_orthogonal
:
if
func
==
most_orthogonal
:
if
type
==
'object'
or
np
==
None
:
if
type
==
'object'
or
np
==
None
:
...
@@ -23,15 +25,16 @@ def run_tests(N):
...
@@ -23,15 +25,16 @@ def run_tests(N):
else
:
else
:
arg
=
N
arg
=
N
try
:
try
:
print
"%s[%s](%s)"
%
(
func
.
__name__
,
type
,
N
)
print
(
"%s[%s](%s)"
%
(
func
.
__name__
,
type
,
N
)
)
with_overflow
=
my_timeit
(
globals
()[
func
.
__name__
+
"_overflow"
][
type
],
arg
)
with_overflow
=
my_timeit
(
globals
()[
func
.
__name__
+
"_overflow"
][
type
],
arg
)
no_overflow
=
my_timeit
(
func
[
type
],
arg
)
no_overflow
=
my_timeit
(
func
[
type
],
arg
)
print
"
\
t
%0.04e
\
t
%0.04e
\
t
%0.04f"
%
(
no_overflow
,
with_overflow
,
with_overflow
/
no_overflow
)
print
(
"
\
t
%0.04e
\
t
%0.04e
\
t
%0.04f"
%
(
no_overflow
,
with_overflow
,
with_overflow
/
no_overflow
)
)
if
func
.
__name__
+
"_overflow_fold"
in
globals
():
if
func
.
__name__
+
"_overflow_fold"
in
globals
():
with_overflow
=
my_timeit
(
globals
()[
func
.
__name__
+
"_overflow_fold"
][
type
],
arg
)
with_overflow
=
my_timeit
(
globals
()[
func
.
__name__
+
"_overflow_fold"
][
type
],
arg
)
print
"
\
t
%0.04e
\
t
%0.04e
\
t
%0.04f"
%
(
no_overflow
,
with_overflow
,
with_overflow
/
no_overflow
),
"(folded)"
print
(
"
\
t
%0.04e
\
t
%0.04e
\
t
%0.04f (folded)"
%
(
no_overflow
,
with_overflow
,
with_overflow
/
no_overflow
))
except
OverflowError
:
except
OverflowError
:
print
" "
,
"Overflow"
print
(
" "
,
"Overflow"
)
def
my_timeit
(
func
,
N
):
def
my_timeit
(
func
,
N
):
global
f
,
arg
global
f
,
arg
...
@@ -44,10 +47,11 @@ def my_timeit(func, N):
...
@@ -44,10 +47,11 @@ def my_timeit(func, N):
break
break
return
res
/
times
return
res
/
times
params
=
sys
.
argv
[
1
:]
params
=
sys
.
argv
[
1
:]
if
not
params
:
if
not
params
:
params
=
[
129
,
9
,
97
]
params
=
[
129
,
9
,
97
]
for
arg
in
params
:
for
arg
in
params
:
print
print
()
print
"N"
,
arg
print
(
"N"
,
arg
)
run_tests
(
int
(
arg
))
run_tests
(
int
(
arg
))
Demos/primes.pyx
View file @
6dd63258
print
"starting"
# cython: language_level=3
print
(
"starting"
)
def
primes
(
int
kmax
):
def
primes
(
int
kmax
):
# cdef int n, k, i
# cdef int n, k, i
...
@@ -10,11 +12,11 @@ def primes(int kmax):
...
@@ -10,11 +12,11 @@ def primes(int kmax):
n
=
2
n
=
2
while
k
<
kmax
:
while
k
<
kmax
:
i
=
0
i
=
0
while
i
<
k
and
n
%
p
[
i
]
<>
0
:
while
i
<
k
and
n
%
p
[
i
]
!=
0
:
i
=
i
+
1
i
+=
1
if
i
==
k
:
if
i
==
k
:
p
[
k
]
=
n
p
[
k
]
=
n
k
=
k
+
1
k
+=
1
result
.
append
(
n
)
result
.
append
(
n
)
n
=
n
+
1
n
+=
1
return
result
return
result
Demos/run_primes.py
View file @
6dd63258
from
__future__
import
absolute_import
,
print_function
import
sys
import
sys
from
primes
import
primes
from
primes
import
primes
if
len
(
sys
.
argv
)
>=
2
:
if
len
(
sys
.
argv
)
>=
2
:
n
=
int
(
sys
.
argv
[
1
])
n
=
int
(
sys
.
argv
[
1
])
else
:
else
:
n
=
1000
n
=
1000
print
primes
(
n
)
print
(
primes
(
n
))
Demos/run_spam.py
View file @
6dd63258
from
__future__
import
absolute_import
,
print_function
from
spam
import
Spam
from
spam
import
Spam
s
=
Spam
()
s
=
Spam
()
print
"Created:"
,
s
print
(
"Created:"
,
s
)
s
.
set_amount
(
42
)
s
.
set_amount
(
42
)
print
"Amount ="
,
s
.
get_amount
(
)
print
(
"Amount ="
,
s
.
get_amount
()
)
s
.
describe
()
s
.
describe
()
s
=
None
s
=
None
Demos/spam.pyx
View file @
6dd63258
# cython: language_level=3
#
#
# Example of an extension type.
# Example of an extension type.
#
#
...
@@ -9,7 +11,7 @@ cdef class Spam:
...
@@ -9,7 +11,7 @@ cdef class Spam:
self
.
amount
=
0
self
.
amount
=
0
def
__dealloc__
(
self
):
def
__dealloc__
(
self
):
print
self
.
amount
,
"tons of spam is history."
print
(
self
.
amount
,
"tons of spam is history."
)
def
get_amount
(
self
):
def
get_amount
(
self
):
return
self
.
amount
return
self
.
amount
...
@@ -18,4 +20,4 @@ cdef class Spam:
...
@@ -18,4 +20,4 @@ cdef class Spam:
self
.
amount
=
new_amount
self
.
amount
=
new_amount
def
describe
(
self
):
def
describe
(
self
):
print
self
.
amount
,
"tons of spam!"
print
(
self
.
amount
,
"tons of spam!"
)
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