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Gwenaël Samain
cython
Commits
ca91ec9b
Commit
ca91ec9b
authored
Jan 17, 2012
by
Mark Florisson
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Plain Diff
slice assignment broadcasting & fix some bugs
parent
017b73ae
Changes
6
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6 changed files
with
208 additions
and
236 deletions
+208
-236
Cython/Compiler/ExprNodes.py
Cython/Compiler/ExprNodes.py
+1
-1
Cython/Compiler/MemoryView.py
Cython/Compiler/MemoryView.py
+12
-48
Cython/Utility/MemoryView.pyx
Cython/Utility/MemoryView.pyx
+145
-168
Cython/Utility/MemoryView_C.c
Cython/Utility/MemoryView_C.c
+11
-12
tests/run/memoryviewattrs.pyx
tests/run/memoryviewattrs.pyx
+2
-2
tests/run/memslice.pyx
tests/run/memslice.pyx
+37
-5
No files found.
Cython/Compiler/ExprNodes.py
View file @
ca91ec9b
...
...
@@ -1694,7 +1694,7 @@ class NameNode(AtomicExprNode):
code
.
error_goto_if_null
(
self
.
result
(),
self
.
pos
)))
code
.
put_gotref
(
self
.
py_result
())
elif
entry
.
is_local
or
entry
.
in_closure
or
entry
.
from_closure
:
elif
entry
.
is_local
or
entry
.
in_closure
or
entry
.
from_closure
or
entry
.
type
.
is_memoryviewslice
:
# Raise UnboundLocalError for objects and memoryviewslices
raise_unbound
=
(
(
self
.
cf_maybe_null
or
self
.
cf_is_null
)
and
not
self
.
allow_null
)
...
...
Cython/Compiler/MemoryView.py
View file @
ca91ec9b
...
...
@@ -431,57 +431,20 @@ def verify_direct_dimensions(node):
for
access
,
packing
in
node
.
type
.
axes
:
if
access
!=
'direct'
:
error
(
self
.
pos
,
"All dimensions must be direct"
)
return
False
return
True
def
broadcast
(
src
,
dst
,
src_temp
,
dst_temp
,
code
):
"Perform an in-place broadcast of slices src and dst"
if
src
.
type
.
ndim
!=
dst
.
type
.
ndim
:
code
.
putln
(
"__pyx_memoryview_broadcast_inplace(&%s, &%s, %d, %d);"
%
(
src_temp
,
dst_temp
,
src
.
type
.
ndim
,
dst
.
type
.
ndim
))
return
max
(
src
.
type
.
ndim
,
dst
.
type
.
ndim
)
return
src
.
type
.
ndim
def
copy_broadcast_memview_src_to_dst_inplace
(
src
,
dst
,
src_temp
,
dst_temp
,
code
):
def
copy_broadcast_memview_src_to_dst
(
src
,
dst
,
code
):
"""
It is hard to check for overlapping memory with indirect slices,
s
o we currently don't support them
.
Copy the contents of slice src to slice dst. Does not support indirect
s
lices
.
"""
if
not
verify_direct_dimensions
(
src
):
return
if
not
verify_direct_dimensions
(
dst
):
return
ndim
=
broadcast
(
src
,
dst
,
src_temp
,
dst_temp
,
code
)
call
=
"%s(&%s, &%s, %d)"
%
(
copy_src_to_dst_cname
(),
src_temp
,
dst_temp
,
ndim
)
code
.
putln
(
code
.
error_goto_if_neg
(
call
,
dst
.
pos
))
def
copy_broadcast_memview_src_to_dst
(
src
,
dst
,
code
):
# Note: do not use code.funcstate.allocate_temp to allocate temps, as
# temps will be acquisition counted (so we would need new
# references, as any sudden exception would cause a jump leading to
# a decref before we can nullify our slice)
src_tmp
=
None
dst_tmp
=
None
code
.
begin_block
()
if
src
.
type
.
ndim
<
dst
.
type
.
ndim
and
not
src
.
result_in_temp
():
src_tmp
=
'__pyx_slice_tmp1'
code
.
putln
(
"%s %s = %s;"
%
(
memviewslice_cname
,
src_tmp
,
src
.
result
()))
if
dst
.
type
.
ndim
<
src
.
type
.
ndim
and
not
dst
.
result_in_temp
():
dst_tmp
=
'__pyx+_slice_tmp2'
code
.
putln
(
"%s %s = %s;"
%
(
memviewslice_cname
,
dst_tmp
,
dst
.
result
()))
copy_broadcast_memview_src_to_dst_inplace
(
src
,
dst
,
src_tmp
or
src
.
result
(),
dst_tmp
or
dst
.
result
(),
code
)
verify_direct_dimensions
(
src
)
verify_direct_dimensions
(
dst
)
code
.
end_block
()
code
.
putln
(
code
.
error_goto_if_neg
(
"%s(%s, %s, %d, %d)"
%
(
copy_src_to_dst_cname
(),
src
.
result
(),
dst
.
result
(),
src
.
type
.
ndim
,
dst
.
type
.
ndim
),
dst
.
pos
))
def
copy_c_or_fortran_cname
(
memview
):
if
memview
.
is_c_contig
:
...
...
@@ -791,7 +754,8 @@ def load_memview_c_utility(util_code_name, context=None, **kwargs):
context
=
context
,
**
kwargs
)
def
use_cython_array_utility_code
(
env
):
env
.
global_scope
().
context
.
cython_scope
.
lookup
(
'array_cwrapper'
).
used
=
True
scope
=
env
.
global_scope
().
context
.
cython_scope
scope
.
lookup
(
'array_cwrapper'
).
used
=
True
env
.
use_utility_code
(
cython_array_utility_code
)
context
=
{
...
...
Cython/Utility/MemoryView.pyx
View file @
ca91ec9b
This diff is collapsed.
Click to expand it.
Cython/Utility/MemoryView_C.c
View file @
ca91ec9b
...
...
@@ -18,12 +18,12 @@ typedef struct {
#define CYTHON_ATOMICS 1
#endif
#define __pyx_atomic_int_type int
/* todo: Portland pgcc, maybe OS X's OSAtomicIncrement32,
libatomic + autotools-like distutils support? Such a pain... */
#if CYTHON_ATOMICS && __GNUC__ >= 4 && (__GNUC_MINOR__ > 1 || \
(__GNUC_MINOR__ == 1 && __GNUC_PATHLEVEL >= 2))
/* gcc >= 4.1.2 */
typedef
volatile
int
__pyx_atomic_int
;
#define __pyx_atomic_incr_aligned(value, lock) __sync_fetch_and_add(value, 1)
#define __pyx_atomic_decr_aligned(value, lock) __sync_fetch_and_sub(value, 1)
...
...
@@ -33,7 +33,7 @@ typedef struct {
#elif CYTHON_ATOMICS && MSC_VER
/* msvc */
#include <Windows.h>
typedef
volatile
LONG
__pyx_atomic_int
;
#define __pyx_atomic_int_type LONG
#define __pyx_atomic_incr_aligned(value, lock) InterlockedIncrement(value)
#define __pyx_atomic_decr_aligned(value, lock) InterlockedDecrement(value)
...
...
@@ -41,7 +41,6 @@ typedef struct {
#warning "Using MSVC atomics"
#endif
#elif CYTHON_ATOMICS && (defined(__ICC) || defined(__INTEL_COMPILER))
typedef
volatile
int
__pyx_atomic_int
;
#define __pyx_atomic_incr_aligned(value, lock) _InterlockedIncrement(value)
#define __pyx_atomic_decr_aligned(value, lock) _InterlockedDecrement(value)
...
...
@@ -49,20 +48,20 @@ typedef struct {
#warning "Using Intel atomics"
#endif
#else
typedef
volatile
int
__pyx_atomic_int
;
#define CYTHON_ATOMICS 0
#ifdef __PYX_DEBUG_ATOMICS
#warning "Not using atomics"
#endif
#endif
typedef
volatile
__pyx_atomic_int_type
__pyx_atomic_int
;
#if CYTHON_ATOMICS
__pyx_atomic_int
CYTHON_INLINE
static
CYTHON_INLINE
__pyx_atomic_int_type
__pyx_atomic_incr_maybealigned
(
__pyx_atomic_int
*
value
,
PyThread_type_lock
lock
);
__pyx_atomic_int
CYTHON_INLINE
static
CYTHON_INLINE
__pyx_atomic_int_type
__pyx_atomic_decr_maybealigned
(
__pyx_atomic_int
*
value
,
PyThread_type_lock
lock
);
#define __pyx_add_acquisition_count(memview) \
...
...
@@ -82,7 +81,7 @@ typedef struct {
#define __pyx_check_unaligned(type, pointer) \
(((type) pointer) & (sizeof(pointer) - 1))
int
CYTHON_INLINE
static
CYTHON_INLINE
int
__pyx_atomic_unaligned
(
__pyx_atomic_int
*
p
)
{
/* uintptr_t is optional in C99, try other stuff */
...
...
@@ -99,7 +98,8 @@ __pyx_atomic_unaligned(__pyx_atomic_int *p)
return
1
;
}
__pyx_atomic_int
CYTHON_INLINE
static
CYTHON_INLINE
__pyx_atomic_int_type
__pyx_atomic_incr_maybealigned
(
__pyx_atomic_int
*
value
,
PyThread_type_lock
lock
)
{
if
(
unlikely
(
__pyx_atomic_unaligned
(
value
)))
...
...
@@ -108,7 +108,7 @@ __pyx_atomic_incr_maybealigned(__pyx_atomic_int *value, PyThread_type_lock lock)
return
__pyx_atomic_incr_aligned
(
value
,
lock
);
}
__pyx_atomic_int
CYTHON_INLINE
static
CYTHON_INLINE
__pyx_atomic_int_type
__pyx_atomic_decr_maybealigned
(
__pyx_atomic_int
*
value
,
PyThread_type_lock
lock
)
{
if
(
unlikely
(
__pyx_atomic_unaligned
(
value
)))
...
...
@@ -522,8 +522,7 @@ __pyx_memoryview_copy_new_contig(const __Pyx_memviewslice *from_mvs,
if
(
unlikely
(
__Pyx_init_memviewslice
(
memview_obj
,
ndim
,
&
new_mvs
)
<
0
))
goto
fail
;
if
(
unlikely
(
__pyx_memoryview_copy_contents
(
({{
memviewslice_name
}}
*
)
from_mvs
,
&
new_mvs
,
ndim
)
<
0
))
if
(
unlikely
(
__pyx_memoryview_copy_contents
(
*
from_mvs
,
new_mvs
,
ndim
,
ndim
)
<
0
))
goto
fail
;
goto
no_fail
;
...
...
tests/run/memoryviewattrs.pyx
View file @
ca91ec9b
...
...
@@ -171,10 +171,10 @@ def test_copy_mismatch():
>>> test_copy_mismatch()
Traceback (most recent call last):
...
ValueError:
memoryview shapes are not the same in dimension 0 (got 2 and 1
)
ValueError:
got differing extents in dimension 0 (got 2 and 3
)
'''
cdef
int
[:,:,::
1
]
mv1
=
array
((
2
,
2
,
3
),
sizeof
(
int
),
'i'
)
cdef
int
[:,:,::
1
]
mv2
=
array
((
1
,
2
,
3
),
sizeof
(
int
),
'i'
)
cdef
int
[:,:,::
1
]
mv2
=
array
((
3
,
2
,
3
),
sizeof
(
int
),
'i'
)
mv1
[...]
=
mv2
...
...
tests/run/memslice.pyx
View file @
ca91ec9b
...
...
@@ -1747,7 +1747,7 @@ def test_slice_assignment():
for
i
in
range
(
10
):
for
j
in
range
(
100
):
carray
[
i
][
j
]
=
i
*
10
+
j
carray
[
i
][
j
]
=
i
*
10
0
+
j
cdef
int
[:,
:]
m
=
carray
cdef
int
[:,
:]
copy
=
m
[
-
6
:
-
1
,
60
:
65
].
copy
()
...
...
@@ -1758,12 +1758,12 @@ def test_slice_assignment():
for
i
in
range
(
5
):
for
j
in
range
(
5
):
assert
copy
[
i
,
j
]
==
m
[
-
5
+
i
,
-
5
+
j
]
assert
copy
[
i
,
j
]
==
m
[
-
5
+
i
,
-
5
+
j
]
,
(
copy
[
i
,
j
],
m
[
-
5
+
i
,
-
5
+
j
])
@
testcase
def
test_slice_assignment_broadcast_leading
_dimensions
():
def
test_slice_assignment_broadcast_leading
():
"""
>>> test_slice_assignment_broadcast_leading
_dimensions
()
>>> test_slice_assignment_broadcast_leading()
"""
cdef
int
array1
[
1
][
10
]
cdef
int
array2
[
10
]
...
...
@@ -1780,4 +1780,36 @@ def test_slice_assignment_broadcast_leading_dimensions():
a
[:,
:]
=
b
[:]
for
i
in
range
(
10
):
assert
a
[
0
,
i
]
==
b
[
i
]
==
10
-
1
-
i
assert
a
[
0
,
i
]
==
b
[
i
]
==
10
-
1
-
i
,
(
b
[
i
],
a
[
0
,
i
])
@
testcase
def
test_slice_assignment_broadcast_strides
():
"""
>>> test_slice_assignment_broadcast_strides()
"""
cdef
int
src_array
[
10
]
cdef
int
dst_array
[
10
][
5
]
cdef
int
i
,
j
for
i
in
range
(
10
):
src_array
[
i
]
=
10
-
1
-
i
cdef
int
[:]
src
=
src_array
cdef
int
[:,
:]
dst
=
dst_array
cdef
int
[:,
:]
dst_f
=
dst
.
copy_fortran
()
dst
[
1
:]
=
src
[
-
1
:
-
6
:
-
1
]
dst_f
[
1
:]
=
src
[
-
1
:
-
6
:
-
1
]
for
i
in
range
(
1
,
10
):
for
j
in
range
(
1
,
5
):
assert
dst
[
i
,
j
]
==
dst_f
[
i
,
j
]
==
j
,
(
dst
[
i
,
j
],
dst_f
[
i
,
j
],
j
)
# test overlapping memory with broadcasting
dst
[:,
1
:
4
]
=
dst
[
1
,
:
3
]
dst_f
[:,
1
:
4
]
=
dst
[
1
,
1
:
4
]
for
i
in
range
(
10
):
for
j
in
range
(
1
,
3
):
assert
dst
[
i
,
j
]
==
dst_f
[
i
,
j
]
==
j
-
1
,
(
dst
[
i
,
j
],
dst_f
[
i
,
j
],
j
-
1
)
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