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Gwenaël Samain
cython
Commits
d055de85
Commit
d055de85
authored
Jun 16, 2018
by
gabrieldemarmiesse
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Used intptr_t instead of int to avoid warnings (and crashes in C++). Removed old examples files.
parent
3d291a58
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83 additions
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203 deletions
+83
-203
docs/examples/tutorial/clibraries/queue3.pyx
docs/examples/tutorial/clibraries/queue3.pyx
+62
-0
docs/src/tutorial/clibraries.rst
docs/src/tutorial/clibraries.rst
+21
-90
docs/src/tutorial/queue_example/cqueue.pxd
docs/src/tutorial/queue_example/cqueue.pxd
+0
-17
docs/src/tutorial/queue_example/queue.pyx
docs/src/tutorial/queue_example/queue.pyx
+0
-96
No files found.
docs/examples/tutorial/clibraries/queue3.pyx
0 → 100644
View file @
d055de85
# queue.pyx
from
libc.stdint
cimport
intptr_t
cimport
cqueue
cdef
class
Queue
:
"""A queue class for C integer values.
>>> q = Queue()
>>> q.append(5)
>>> q.peek()
5
>>> q.pop()
5
"""
cdef
cqueue
.
Queue
*
_c_queue
def
__cinit__
(
self
):
self
.
_c_queue
=
cqueue
.
queue_new
()
if
self
.
_c_queue
is
NULL
:
raise
MemoryError
()
def
__dealloc__
(
self
):
if
self
.
_c_queue
is
not
NULL
:
cqueue
.
queue_free
(
self
.
_c_queue
)
cpdef
append
(
self
,
intptr_t
value
):
if
not
cqueue
.
queue_push_tail
(
self
.
_c_queue
,
<
void
*>
value
):
raise
MemoryError
()
cdef
extend
(
self
,
intptr_t
*
values
,
size_t
count
):
cdef
size_t
i
for
i
in
range
(
count
):
if
not
cqueue
.
queue_push_tail
(
self
.
_c_queue
,
<
void
*>
values
[
i
]):
raise
MemoryError
()
# The `cpdef` feature is obviously not available for the `extend()`
# method, as the method signature is incompatible with Python argument
# types (Python doesn't have pointers). However, we can make a method
# called `extend_python` instead that accepts an arbitrary Python iterable.
cpdef
extend_python
(
self
,
values
):
for
value
in
values
:
self
.
append
(
value
)
cpdef
intptr_t
peek
(
self
)
except
?
-
1
:
cdef
intptr_t
value
=
<
intptr_t
>
cqueue
.
queue_peek_head
(
self
.
_c_queue
)
if
value
==
0
:
# this may mean that the queue is empty,
# or that it happens to contain a 0 value
if
cqueue
.
queue_is_empty
(
self
.
_c_queue
):
raise
IndexError
(
"Queue is empty"
)
return
value
cpdef
intptr_t
pop
(
self
)
except
?
-
1
:
if
cqueue
.
queue_is_empty
(
self
.
_c_queue
):
raise
IndexError
(
"Queue is empty"
)
return
<
intptr_t
>
cqueue
.
queue_pop_head
(
self
.
_c_queue
)
def
__bool__
(
self
):
return
not
cqueue
.
queue_is_empty
(
self
.
_c_queue
)
docs/src/tutorial/clibraries.rst
View file @
d055de85
...
...
@@ -318,28 +318,27 @@ to give them a straight C interface.
In C, it is common for data structures to store data as a ``void*`` to
whatever data item type. Since we only want to store ``int`` values,
which usually fit into the size of a pointer type, we can avoid
additional memory allocations through a trick: we cast our ``int`` values
to ``void*`` and vice versa, and store the value directly as the
pointer value.
which usually fit into the size of a pointer type, we will use ``intptr_t``
as it is garanteed to be at least as big as an ``int`` and the same size
as a ``void*``
Here is a simple implementation for the ``append()`` method::
cdef append(self, int value):
cdef append(self, int
ptr_t
value):
cqueue.queue_push_tail(self._c_queue, <void*>value)
Again, the same error handling considerations as for the
``__cinit__()`` method apply, so that we end up with this
implementation instead::
cdef append(self, int value):
cdef append(self, int
ptr_t
value):
if not cqueue.queue_push_tail(self._c_queue,
<void*>value):
raise MemoryError()
Adding an ``extend()`` method should now be straight forward::
cdef extend(self, int* values, size_t count):
cdef extend(self, int
ptr_t
* values, size_t count):
"""Append all ints to the queue.
"""
cdef size_t i
...
...
@@ -355,11 +354,11 @@ So far, we can only add data to the queue. The next step is to write
the two methods to get the first element: ``peek()`` and ``pop()``,
which provide read-only and destructive read access respectively::
cdef int peek(self):
return <int>cqueue.queue_peek_head(self._c_queue)
cdef int
ptr_t
peek(self):
return <int
ptr_t
>cqueue.queue_peek_head(self._c_queue)
cdef int pop(self):
return <int>cqueue.queue_pop_head(self._c_queue)
cdef int
ptr_t
pop(self):
return <int
ptr_t
>cqueue.queue_pop_head(self._c_queue)
Handling errors
...
...
@@ -375,8 +374,8 @@ first case to raise an exception, whereas the second case should
simply return ``0``. To deal with this, we need to special case this
value, and check if the queue really is empty or not::
cdef int peek(self) except? -1:
value = <int>cqueue.queue_peek_head(self._c_queue)
cdef int
ptr_t
peek(self) except? -1:
value = <int
ptr_t
>cqueue.queue_peek_head(self._c_queue)
if value == 0:
# this may mean that the queue is empty, or
# that it happens to contain a 0 value
...
...
@@ -425,10 +424,10 @@ also needs adaptation. Since it removes a value from the queue,
however, it is not enough to test if the queue is empty *after* the
removal. Instead, we must test it on entry::
cdef int pop(self) except? -1:
cdef int
ptr_t
pop(self) except? -1:
if cqueue.queue_is_empty(self._c_queue):
raise IndexError("Queue is empty")
return <int>cqueue.queue_pop_head(self._c_queue)
return <int
ptr_t
>cqueue.queue_pop_head(self._c_queue)
The return value for exception propagation is declared exactly as for
``peek()``.
...
...
@@ -467,77 +466,9 @@ methods even when they are called from Cython. This adds a tiny overhead
compared to ``cdef`` methods.
The following listing shows the complete implementation that uses
``cpdef`` methods where possible::
cimport cqueue
cdef class Queue:
"""A queue class for C integer values.
>>> q = Queue()
>>> q.append(5)
>>> q.peek()
5
>>> q.pop()
5
"""
cdef cqueue.Queue* _c_queue
def __cinit__(self):
self._c_queue = cqueue.queue_new()
if self._c_queue is NULL:
raise MemoryError()
def __dealloc__(self):
if self._c_queue is not NULL:
cqueue.queue_free(self._c_queue)
cpdef append(self, int value):
if not cqueue.queue_push_tail(self._c_queue,
<void*>value):
raise MemoryError()
cdef extend(self, int* values, size_t count):
cdef size_t i
for i in xrange(count):
if not cqueue.queue_push_tail(
self._c_queue, <void*>values[i]):
raise MemoryError()
cpdef int peek(self) except? -1:
cdef int value = \
<int>cqueue.queue_peek_head(self._c_queue)
if value == 0:
# this may mean that the queue is empty,
# or that it happens to contain a 0 value
if cqueue.queue_is_empty(self._c_queue):
raise IndexError("Queue is empty")
return value
cpdef int pop(self) except? -1:
if cqueue.queue_is_empty(self._c_queue):
raise IndexError("Queue is empty")
return <int>cqueue.queue_pop_head(self._c_queue)
def __bool__(self):
return not cqueue.queue_is_empty(self._c_queue)
The ``cpdef`` feature is obviously not available for the ``extend()``
method, as the method signature is incompatible with Python argument
types. However, if wanted, we can rename the C-ish ``extend()``
method to e.g. ``c_extend()``, and write a new ``extend()`` method
instead that accepts an arbitrary Python iterable::
cdef c_extend(self, int* values, size_t count):
cdef size_t i
for i in range(count):
if not cqueue.queue_push_tail(
self._c_queue, <void*>values[i]):
raise MemoryError()
cpdef extend(self, values):
for value in values:
self.append(value)
``cpdef`` methods where possible:
.. literalinclude:: ../../examples/tutorial/clibraries/queue3.pyx
Now we can test our Queue implementation using a python script,
for example here :file:`test_queue.py`:
...
...
@@ -545,7 +476,7 @@ for example here :file:`test_queue.py`:
.. literalinclude:: ../../examples/tutorial/clibraries/test_queue.py
As a quick test with 10000 numbers on the author'
s
machine
indicates
,
using
this
Queue
from
Cython
code
with
C
``
int
``
values
is
about
five
using
this
Queue
from
Cython
code
with
C
``
int
ptr_t
``
values
is
about
five
times
as
fast
as
using
it
from
Cython
code
with
Python
object
values
,
almost
eight
times
faster
than
using
it
from
Python
code
in
a
Python
loop
,
and
still
more
than
twice
as
fast
as
using
Python
's highly
...
...
@@ -574,12 +505,12 @@ predicate. The API could look as follows::
*
0
for
reject
*
1
for
accept
*/
typedef
int
(*
predicate_func
)(
void
*
user_context
,
QueueValue
data
);
typedef
int
ptr_t
(*
predicate_func
)(
void
*
user_context
,
QueueValue
data
);
/*
Pop
values
as
long
as
the
predicate
evaluates
to
true
for
them
,
*
returns
-
1
if
the
predicate
failed
with
an
error
and
0
otherwise
.
*/
int
queue_pop_head_until
(
Queue
*
queue
,
predicate_func
predicate
,
int
ptr_t
queue_pop_head_until
(
Queue
*
queue
,
predicate_func
predicate
,
void
*
user_context
);
It
is
normal
for
C
callback
functions
to
have
a
generic
:
c
:
type
:`
void
*`
...
...
@@ -590,13 +521,13 @@ predicate function.
First
,
we
have
to
define
a
callback
function
with
the
expected
signature
that
we
can
pass
into
the
C
-
API
function
::
cdef
int
evaluate_predicate
(
void
*
context
,
cqueue
.
QueueValue
value
):
cdef
int
ptr_t
evaluate_predicate
(
void
*
context
,
cqueue
.
QueueValue
value
):
"Callback function that can be passed as predicate_func"
try
:
#
recover
Python
function
object
from
void
*
argument
func
=
<
object
>
context
#
call
function
,
convert
result
into
0
/
1
for
True
/
False
return
bool
(
func
(<
int
>
value
))
return
bool
(
func
(<
int
ptr_t
>
value
))
except
:
#
catch
any
Python
errors
and
return
error
indicator
return
-
1
...
...
docs/src/tutorial/queue_example/cqueue.pxd
deleted
100644 → 0
View file @
3d291a58
cdef
extern
from
"libcalg/queue.h"
:
ctypedef
struct
Queue
:
pass
ctypedef
void
*
QueueValue
Queue
*
queue_new
()
void
queue_free
(
Queue
*
queue
)
int
queue_push_head
(
Queue
*
queue
,
QueueValue
data
)
QueueValue
queue_pop_head
(
Queue
*
queue
)
QueueValue
queue_peek_head
(
Queue
*
queue
)
int
queue_push_tail
(
Queue
*
queue
,
QueueValue
data
)
QueueValue
queue_pop_tail
(
Queue
*
queue
)
QueueValue
queue_peek_tail
(
Queue
*
queue
)
int
queue_is_empty
(
Queue
*
queue
)
docs/src/tutorial/queue_example/queue.pyx
deleted
100644 → 0
View file @
3d291a58
cimport
cqueue
cdef
class
Queue
:
cdef
cqueue
.
Queue
*
_c_queue
def
__cinit__
(
self
):
self
.
_c_queue
=
cqueue
.
queue_new
()
if
self
.
_c_queue
is
NULL
:
raise
MemoryError
()
def
__dealloc__
(
self
):
if
self
.
_c_queue
is
not
NULL
:
cqueue
.
queue_free
(
self
.
_c_queue
)
cpdef
int
append
(
self
,
int
value
)
except
-
1
:
if
not
cqueue
.
queue_push_tail
(
self
.
_c_queue
,
<
void
*>
value
):
raise
MemoryError
()
return
0
cdef
int
extend
(
self
,
int
*
values
,
Py_ssize_t
count
)
except
-
1
:
cdef
Py_ssize_t
i
for
i
in
range
(
count
):
if
not
cqueue
.
queue_push_tail
(
self
.
_c_queue
,
<
void
*>
values
[
i
]):
raise
MemoryError
()
return
0
cpdef
int
peek
(
self
)
except
?
0
:
cdef
int
value
=
<
int
>
cqueue
.
queue_peek_head
(
self
.
_c_queue
)
if
value
==
0
:
# this may mean that the queue is empty, or that it
# happens to contain a 0 value
if
cqueue
.
queue_is_empty
(
self
.
_c_queue
):
raise
IndexError
(
"Queue is empty"
)
return
value
cpdef
int
pop
(
self
)
except
?
0
:
cdef
int
value
=
<
int
>
cqueue
.
queue_pop_head
(
self
.
_c_queue
)
if
value
==
0
:
# this may mean that the queue is empty, or that it
# happens to contain a 0 value
if
cqueue
.
queue_is_empty
(
self
.
_c_queue
):
raise
IndexError
(
"Queue is empty"
)
return
value
def
__bool__
(
self
):
# same as __nonzero__ in Python 2.x
return
not
cqueue
.
queue_is_empty
(
self
.
_c_queue
)
DEF
repeat_count
=
10000
def
test_cy
():
cdef
int
i
cdef
Queue
q
=
Queue
()
for
i
in
range
(
repeat_count
):
q
.
append
(
i
)
for
i
in
range
(
repeat_count
):
q
.
peek
()
while
q
:
q
.
pop
()
def
test_py
():
cdef
int
i
q
=
Queue
()
for
i
in
range
(
repeat_count
):
q
.
append
(
i
)
for
i
in
range
(
repeat_count
):
q
.
peek
()
while
q
:
q
.
pop
()
from
collections
import
deque
def
test_deque
():
cdef
int
i
q
=
deque
()
for
i
in
range
(
repeat_count
):
q
.
appendleft
(
i
)
for
i
in
range
(
repeat_count
):
q
[
-
1
]
while
q
:
q
.
pop
()
repeat
=
range
(
repeat_count
)
def
test_py_exec
():
q
=
Queue
()
d
=
dict
(
q
=
q
,
repeat
=
repeat
)
exec
u"""
\
for i in repeat:
q.append(9)
for i in repeat:
q.peek()
while q:
q.pop()
"""
in
d
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