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Gwenaël Samain
cython
Commits
d90d2455
Commit
d90d2455
authored
Aug 15, 2008
by
Robert Bradshaw
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Plain Diff
More NumPy array fixes.
parent
43bef567
Changes
3
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Showing
3 changed files
with
65 additions
and
8 deletions
+65
-8
Cython/Compiler/Buffer.py
Cython/Compiler/Buffer.py
+8
-4
Cython/Includes/numpy.pxd
Cython/Includes/numpy.pxd
+32
-2
tests/run/tnumpy.pyx
tests/run/tnumpy.pyx
+25
-2
No files found.
Cython/Compiler/Buffer.py
View file @
d90d2455
...
@@ -453,14 +453,18 @@ def get_ts_check_item(dtype, writer):
...
@@ -453,14 +453,18 @@ def get_ts_check_item(dtype, writer):
if
not
writer
.
globalstate
.
has_utility_code
(
name
):
if
not
writer
.
globalstate
.
has_utility_code
(
name
):
char
=
dtype
.
typestring
char
=
dtype
.
typestring
if
char
is
not
None
:
if
char
is
not
None
:
# Can use direct comparison
# Can use direct comparison
if
char
is
'O'
:
byteorder
=
'|'
else
:
byteorder
=
'1'
code
=
dedent
(
"""
\
code
=
dedent
(
"""
\
if (*ts == '
1
') ++ts;
if (*ts == '
%s
') ++ts;
if (*ts != '%s') {
if (*ts != '%s') {
PyErr_Format(PyExc_ValueError, "Buffer datatype mismatch (
rejecting on
'%%s')", ts);
PyErr_Format(PyExc_ValueError, "Buffer datatype mismatch (
expecting '%s' got
'%%s')", ts);
return NULL;
return NULL;
} else return ts + 1;
} else return ts + 1;
"""
,
2
)
%
char
"""
,
2
)
%
(
byteorder
,
char
,
char
)
else
:
else
:
# Cannot trust declared size; but rely on int vs float and
# Cannot trust declared size; but rely on int vs float and
# signed/unsigned to be correctly declared
# signed/unsigned to be correctly declared
...
...
Cython/Includes/numpy.pxd
View file @
d90d2455
from
stdlib
cimport
malloc
,
free
cdef
extern
from
"Python.h"
:
cdef
extern
from
"Python.h"
:
ctypedef
int
Py_intptr_t
ctypedef
int
Py_intptr_t
...
@@ -5,6 +8,15 @@ cdef extern from "numpy/arrayobject.h":
...
@@ -5,6 +8,15 @@ cdef extern from "numpy/arrayobject.h":
ctypedef
Py_intptr_t
npy_intp
ctypedef
Py_intptr_t
npy_intp
ctypedef
struct
PyArray_Descr
:
ctypedef
struct
PyArray_Descr
:
int
elsize
int
elsize
char
byteorder
ctypedef
class
numpy
.
ndarray
[
object
PyArrayObject
]
int
PyArray_NDIM
(
ndarray
)
bint
PyTypeNum_ISNUMBER
(
int
)
bint
PyTypeNum_ISCOMPLEX
(
int
)
ctypedef
class
numpy
.
ndarray
[
object
PyArrayObject
]:
ctypedef
class
numpy
.
ndarray
[
object
PyArrayObject
]:
cdef
:
cdef
:
...
@@ -24,15 +36,33 @@ cdef extern from "numpy/arrayobject.h":
...
@@ -24,15 +36,33 @@ cdef extern from "numpy/arrayobject.h":
raise
RuntimeError
(
"Py_intptr_t and Py_ssize_t differs in size, numpy.pxd does not support this"
)
raise
RuntimeError
(
"Py_intptr_t and Py_ssize_t differs in size, numpy.pxd does not support this"
)
cdef
int
typenum
=
PyArray_TYPE
(
self
)
cdef
int
typenum
=
PyArray_TYPE
(
self
)
# NumPy format codes doesn't completely match buffer codes;
# seems safest to retranslate.
cdef
char
*
base_codes
=
"?bBhHiIlLqQfdgfdgO"
if
not
base_codes
[
typenum
]
==
'O'
and
not
PyTypeNum_ISNUMBER
(
typenum
):
raise
ValueError
,
"Only numeric and object NumPy types currently supported."
info
.
buf
=
<
void
*>
self
.
data
info
.
buf
=
<
void
*>
self
.
data
info
.
ndim
=
2
info
.
ndim
=
PyArray_NDIM
(
self
)
info
.
strides
=
<
Py_ssize_t
*>
self
.
strides
info
.
strides
=
<
Py_ssize_t
*>
self
.
strides
info
.
shape
=
<
Py_ssize_t
*>
self
.
dimensions
info
.
shape
=
<
Py_ssize_t
*>
self
.
dimensions
info
.
suboffsets
=
NULL
info
.
suboffsets
=
NULL
info
.
format
=
"i"
info
.
itemsize
=
self
.
descr
.
elsize
info
.
itemsize
=
self
.
descr
.
elsize
info
.
readonly
=
not
PyArray_ISWRITEABLE
(
self
)
info
.
readonly
=
not
PyArray_ISWRITEABLE
(
self
)
cdef
char
*
fp
fp
=
info
.
format
=
<
char
*>
malloc
(
4
)
fp
[
0
]
=
self
.
descr
.
byteorder
cdef
bint
is_complex
=
not
not
PyTypeNum_ISCOMPLEX
(
typenum
)
if
is_complex
:
fp
[
1
]
=
'Z'
fp
[
1
+
is_complex
]
=
base_codes
[
typenum
]
fp
[
2
+
is_complex
]
=
0
def
__releasebuffer__
(
ndarray
self
,
Py_buffer
*
info
):
free
(
info
.
format
)
# PS TODO TODO!: Py_ssize_t vs Py_intptr_t
# PS TODO TODO!: Py_ssize_t vs Py_intptr_t
...
...
tests/run/tnumpy.pyx
View file @
d90d2455
# cannot be named "numpy" in order to no clash with the numpy module!
# cannot be named "numpy" in order to no
t
clash with the numpy module!
cimport
numpy
cimport
numpy
...
@@ -11,12 +11,35 @@ try:
...
@@ -11,12 +11,35 @@ try:
[5 6 7 8 9]]
[5 6 7 8 9]]
2 0 9 5
2 0 9 5
>>> three_dim()
[[[ 0. 1. 2. 3.]
[ 4. 5. 6. 7.]]
[[ 8. 9. 10. 11.]
[ 12. 13. 14. 15.]]
[[ 16. 17. 18. 19.]
[ 20. 21. 22. 23.]]]
6.0 0.0 13.0 8.0
>>> tnumpy.obj_array()
[a 1 {}]
a 1 {}
"""
"""
except
:
except
:
__doc__
=
""
__doc__
=
""
def
basic
():
def
basic
():
cdef
object
[
int
,
2
]
buf
=
numpy
.
arange
(
10
).
reshape
((
2
,
5
))
cdef
object
[
int
,
2
]
buf
=
numpy
.
arange
(
10
,
dtype
=
'i'
).
reshape
((
2
,
5
))
print
buf
print
buf
print
buf
[
0
,
2
],
buf
[
0
,
0
],
buf
[
1
,
4
],
buf
[
1
,
0
]
print
buf
[
0
,
2
],
buf
[
0
,
0
],
buf
[
1
,
4
],
buf
[
1
,
0
]
def
three_dim
():
cdef
object
[
double
,
3
]
buf
=
numpy
.
arange
(
24
,
dtype
=
'd'
).
reshape
((
3
,
2
,
4
))
print
buf
print
buf
[
0
,
1
,
2
],
buf
[
0
,
0
,
0
],
buf
[
1
,
1
,
1
],
buf
[
1
,
0
,
0
]
def
obj_array
():
cdef
object
[
object
,
1
]
buf
=
numpy
.
array
([
"a"
,
1
,
{}])
print
buf
print
buf
[
0
],
buf
[
1
],
buf
[
2
]
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