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Gwenaël Samain
cython
Commits
e55c2b7f
Commit
e55c2b7f
authored
Feb 19, 2019
by
Stefan Behnel
Committed by
GitHub
Feb 19, 2019
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Merge pull request #2852 from jdemeyer/trashcan
Document trashcan
parents
f781880b
e2d73ad2
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CHANGES.rst
CHANGES.rst
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docs/src/userguide/extension_types.rst
docs/src/userguide/extension_types.rst
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CHANGES.rst
View file @
e55c2b7f
...
...
@@ -33,6 +33,10 @@ Features added
*
``--
no
-
capture
``
added
to
``
runtests
.
py
``
to
prevent
stdout
/
stderr
capturing
during
srctree
tests
.
Patch
by
Matti
Picus
.
*
``@
cython
.
trashcan
(
True
)``
can
be
used
on
an
extension
type
to
enable
the
CPython
trashcan
.
This
allows
deallocating
deeply
recursive
objects
without
overflowing
the
stack
.
Patch
by
Jeroen
Demeyer
.
(
Github
issue
#
2842
)
Bugs
fixed
----------
...
...
docs/src/userguide/extension_types.rst
View file @
e55c2b7f
...
...
@@ -611,10 +611,95 @@ object called :attr:`__weakref__`. For example,::
cdef object __weakref__
Controlling
cyclic
garbage collection in CPython
================================================
Controlling
deallocation and
garbage collection in CPython
================================================
==========
By default each extension type will support the cyclic garbage collector of
.. NOTE::
This section only applies to the usual CPython implementation
of Python. Other implementations like PyPy work differently.
.. _dealloc_intro:
Introduction
------------
First of all, it is good to understand that there are two ways to
trigger deallocation of Python objects in CPython:
CPython uses reference counting for all objects and any object with a
reference count of zero is immediately deallocated. This is the most
common way of deallocating an object. For example, consider ::
>>> x = "foo"
>>> x = "bar"
After executing the second line, the string ``"foo"`` is no longer referenced,
so it is deallocated. This is done using the ``tp_dealloc`` slot, which can be
customized in Cython by implementing ``__dealloc__``.
The second mechanism is the cyclic garbage collector.
This is meant to resolve cyclic reference cycles such as ::
>>> class Object:
... pass
>>> def make_cycle():
... x = Object()
... y = [x]
... x.attr = y
When calling ``make_cycle``, a reference cycle is created since ``x``
references ``y`` and vice versa. Even though neither ``x`` or ``y``
are accessible after ``make_cycle`` returns, both have a reference count
of 1, so they are not immediately deallocated. At regular times, the garbage
collector runs, which will notice the reference cycle
(using the ``tp_traverse`` slot) and break it.
Breaking a reference cycle means taking an object in the cycle
and removing all references from it to other Python objects (we call this
*clearing* an object). Clearing is almost the same as deallocating, except
that the actual object is not yet freed. For ``x`` in the example above,
the attributes of ``x`` would be removed from ``x``.
Note that it suffices to clear just one object in the reference cycle,
since there is no longer a cycle after clearing one object. Once the cycle
is broken, the usual refcount-based deallocation will actually remove the
objects from memory. Clearing is implemented in the ``tp_clear`` slot.
As we just explained, it is sufficient that one object in the cycle
implements ``tp_clear``.
Enabling the deallocation trashcan
----------------------------------
In CPython, it is possible to create deeply recursive objects. For example::
>>> L = None
>>> for i in range(2**20):
... L = [L]
Now imagine that we delete the final ``L``. Then ``L`` deallocates
``L[0]``, which deallocates ``L[0][0]`` and so on until we reach a
recursion depth of ``2**20``. This deallocation is done in C and such
a deep recursion will likely overflow the C call stack, crashing Python.
CPython invented a mechanism for this called the *trashcan*. It limits the
recursion depth of deallocations by delaying some deallocations.
By default, Cython extension types do not use the trashcan but it can be
enabled by setting the ``trashcan`` directive to ``True``. For example::
cimport cython
@cython.trashcan(True)
cdef class Object:
cdef dict __dict__
Trashcan usage is inherited by subclasses
(unless explicitly disabled by ``@cython.trashcan(False)``).
Some builtin types like ``list`` use the trashcan, so subclasses of it
use the trashcan by default.
Disabling cycle breaking (``tp_clear``)
---------------------------------------
By default, each extension type will support the cyclic garbage collector of
CPython. If any Python objects can be referenced, Cython will automatically
generate the ``tp_traverse`` and ``tp_clear`` slots. This is usually what you
want.
...
...
@@ -622,13 +707,13 @@ want.
There is at least one reason why this might not be what you want: If you need
to cleanup some external resources in the ``__dealloc__`` special function and
your object happened to be in a reference cycle, the garbage collector may
have triggered a call to ``tp_clear`` to
drop references. This is the way tha
t
reference cycles are broken so that the garbage can actually be reclaimed
.
have triggered a call to ``tp_clear`` to
clear the objec
t
(see :ref:`dealloc_intro`)
.
In that case
any object references have vanished by the time when
``__dealloc__`` is called. Now your cleanup code lost access to the objects it
has to clean up. In that case you can disable the cycle breaker ``tp_clear``
by using the ``no_gc_clear`` decorator
::
In that case
, any object references have vanished when ``__dealloc__``
is called. Now your cleanup code lost access to the objects it has to clean up.
To fix this, you can disable clearing instances of a specific class by using
the ``no_gc_clear`` directive
::
@cython.no_gc_clear
cdef class DBCursor:
...
...
@@ -641,17 +726,21 @@ by using the ``no_gc_clear`` decorator ::
This example tries to close a cursor via a database connection when the Python
object is destroyed. The ``DBConnection`` object is kept alive by the reference
from ``DBCursor``. But if a cursor happens to be in a reference cycle, the
garbage collector may
effectively "steal"
the database connection reference,
garbage collector may
delete
the database connection reference,
which makes it impossible to clean up the cursor.
Using the ``no_gc_clear`` decorator this can not happen anymore because the
references of a cursor object will not be cleared anymore.
If you use ``no_gc_clear``, it is important that any given reference cycle
contains at least one object *without* ``no_gc_clear``. Otherwise, the cycle
cannot be broken, which is a memory leak.
Disabling cyclic garbage collection
-----------------------------------
In rare cases, extension types can be guaranteed not to participate in cycles,
but the compiler won't be able to prove this. This would be the case if
the class can never reference itself, even indirectly.
In that case, you can manually disable cycle collection by using the
``no_gc`` d
ecorator
, but beware that doing so when in fact the extension type
``no_gc`` d
irective
, but beware that doing so when in fact the extension type
can participate in cycles could cause memory leaks ::
@cython.no_gc
...
...
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