Remove deprecated issues_tracker and issues_tracker_id from project model

Closes #3941

See merge request !4603

Update schema.rb for most recent migrations

Fixes #18532

See merge request !4636

The schema doesn’t reflect the changes of the last 3 migrations:

* 20160610140403_remove_notification_setting_not_null_constraints.rb
* 20160610201627_migrate_users_notification_level.rb
* 20160610301627_remove_notification_level_from_users.rb

Remove counters from Pipeline navigation

* counters are heavy from UI perspective
* duplicates information from tabs below
* shows 0 for less active projects. Jumps from 0 to N constantly. 

I think we should render counters only when necessary and only for filters ( tabs on white bg ).  Exception:  issues, merge requests in top navigation as status of project popularity and action required from maintainers 


cc @grzesiek @ayufan @jschatz1 

See merge request !4617

Improve Gitlab::Auth method names

Auth.find was a very generic name for a very specific method.
Auth.find_in_gitlab_or_ldap was inaccurate in GitLab EE where it also
looks in Kerberos.


See merge request !4589

Enable Style/MultilineBlockChain rubocop style cop

Avoid multi-line chains of blocks.

See #17478.

See merge request !4349

Update brakeman from 3.2.1 to 3.3.2

Removes a few dependencies.

Changelog: https://github.com/presidentbeef/brakeman/blob/master/CHANGES

See merge request !4627

Fix typo causing related branches to Error 500

From Sentry: https://sentry.gitlap.com/gitlab/gitlabcom/issues/6154/

See merge request !4611

Fixes bulk-assign label for multiple issues not having the same labels

## What does this MR do?
Fixes a bug when bulk-assigning a label to multiple issues while the label is present in on the issues on the selection.

## Screenshots (if relevant)

**Before Bugfix**

<img src="/uploads/ad1f290bcf3930177a3a71c69cbe5325/before-bugfix.gif" width="700"/>

**After Bugfix**

<img src="/uploads/1f04d6bf027806fb13ca3773febda744/bugfix.gif" width="700"/>

## Does this MR meet the acceptance criteria?

- [x] Tests
  - [x] Added for this feature/bug
  - [x] All builds are passing
- [x] Branch has no merge conflicts with `master` (if you do - rebase it please)

See merge request !4602

Added when to artifacts

The syntax for this will be:

```
job:
  artifacts:
    when: on_failure
```

cc @grzesiek @tmaczukin 

Fixes https://gitlab.com/gitlab-org/gitlab-ce/issues/4034


See merge request !4201

Cache only apt and ruby from vendor

## What does this MR do?

Optimises caching mechanism when testing gitlab-ce/ee repositories.


See merge request !4619

Instrument all Banzai::ReferenceParser classes

## What does this MR do?

This MR instruments all the classes in the `Banzai::ReferenceParser` namespace.

## Are there points in the code the reviewer needs to double check?

No.

## Why was this MR needed?

The classes in question weren't instrumented meaning we have no idea how they're performing in production.

## What are the relevant issue numbers?

None.

## Does this MR meet the acceptance criteria?

- [x] [CHANGELOG](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/CHANGELOG) entry added
- [ ] ~~[Documentation created/updated](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/doc/development/doc_styleguide.md)~~
- [ ] ~~API support added~~
- [ ] ~~Tests~~
- [x] Conform by the [style guides](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/CONTRIBUTING.md#style-guides)
- [ ] Branch has no merge conflicts with `master` (if you do - rebase it please)
- [x] [Squashed related commits together](https://git-scm.com/book/en/Git-Tools-Rewriting-History#Squashing-Commits)

See merge request !4620

Add guide on changing a document's location

## What does this MR do?

Add a documentation styleguide when changing a document's location.

## What are the relevant issue numbers?

https://gitlab.com/gitlab-org/gitlab-ce/issues/3349


See merge request !4624

Change to new Notes styleguide



See merge request !4625

[ci skip]

[ci skip]

Fix migration helper race conditions

## What does this MR do?

This MR fixes two problems with the migration helpers:

1. An error in `change_column_null` would not drop the previously created column
2. `update_column_in_batches` would rely on the number of rows in a table to determine how many to update. This meant that newly inserted rows (after the `COUNT`) would not be taken into account.

This MR also removes an outdated comment for `update_column_in_batches`.

## Are there points in the code the reviewer needs to double check?

No.

## Why was this MR needed?

See above.

## What are the relevant issue numbers?

Fixes #18483

## Does this MR meet the acceptance criteria?

- [ ] [CHANGELOG](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/CHANGELOG) entry added
- [x] [Documentation created/updated](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/doc/development/doc_styleguide.md)
- [ ] ~~API support added~~
- [ ] Tests
  - [x] Added for this feature/bug
  - [ ] All builds are passing
- [ ] Conform by the [style guides](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/CONTRIBUTING.md#style-guides)
- [ ] Branch has no merge conflicts with `master` (if you do - rebase it please)
- [x] [Squashed related commits together](https://git-scm.com/book/en/Git-Tools-Rewriting-History#Squashing-Commits)

See merge request !4618

Only show branches for revert / cherry-pick

## What does this MR do?

Stop showing tags in the revert and cherry-pick select options. You can't change a tag anyway.

## Are there points in the code the reviewer needs to double check?

Uncertain.

## Why was this MR needed?

Showing tags doesn't make any sense and will just throw an exception if the user tries to cherry-pick or revert onto a tag.

## What are the relevant issue numbers?

Fixes #18377.

## Screenshots (if relevant)

On the GitLab CE repo:

![image](/uploads/9c5a6f09300a7c46d0a794bef2956992/image.png)

## Does this MR meet the acceptance criteria?

- [x] [CHANGELOG](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/CHANGELOG) entry added
- [ ] [Documentation created/updated](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/doc/development/doc_styleguide.md)
- [ ] API support added
- [ ] Tests
  - [x] Added for this feature/bug
  - [ ] All builds are passing
- [x] Conform by the [style guides](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/CONTRIBUTING.md#style-guides)
- [x] Branch has no merge conflicts with `master` (if you do - rebase it please)
- [x] [Squashed related commits together](https://git-scm.com/book/en/Git-Tools-Rewriting-History#Squashing-Commits)

See merge request !4596

Change logs.md location in README

## What does this MR do?

Forgotten link from https://gitlab.com/gitlab-org/gitlab-ce/merge_requests/4622

See merge request !4623

Move logs/logs.md to administration/logs.md

## What does this MR do?

Move `logs.md` documentation under `administration/` where it fits better.

## Why was this MR needed?

For a better doc structure.

## What are the relevant issue numbers?

https://gitlab.com/gitlab-org/gitlab-ce/issues/3349

See merge request !4622

[ci skip]

Remove notification level from user model

part of #3359 

See merge request !4494

[ci skip]

Tags are immutable, so we can't add a commit to either revert or
cherry-pick another commit to them.

Now that this code is no longer part of Banzai::Filter it needs to be
instrumented explicitly.

Instead of updating a fixed number of rows (based on the amount of rows
available at the start of the update) the method
"update_column_in_batches" will now continue updating rows until it runs
out of rows to process.

For a table with a high rate of inserts this may result in the migration
taking quite some time. However, the alternative is not all rows being
updated or the "change_column_null" method raising an error due to there
being NULL values.