Catch permission denied errors and ignore the disk



See merge request !5017

[ci skip]

Remove duplicated entries from CHANGELOG

[ci skip]

See merge request !5028

Build path sends JSON file path

## What does this MR do?

Fixes an issue with browser caching JSON response on build page.

Steps to see:

- Open build (https://gitlab.com/gitlab-org/gitlab-ce/builds/2030226)
- Close tab
- Re-open tab

You should now see some JSON 😞 

This MR appends `.json` to the end of the build URL so that the browser can't cache it as the same URL.


See merge request !4935

Cleanup forgotten lines

The `coveralls` gem was unused and thus removed in 7a2f25a8. I've forgotten some lines in that MR

See merge request !5025

Do not show build retry link when build is active

Closes #19244

See merge request !4967

Remove hardcoded gitlab-shell version in test env now that the required tag is published

See merge request !5023

Handle external issues in IssueReferenceFilter

Rendering issue references such as `#1` was broken for projects using an external issues tracker.

See gitlab-org/gitlab-ce#19036

See merge request !4988

Allow importing from Github using Personal Access Tokens

_Originally opened at !4005 by @ericidema._

------

## What does this MR do?

* Made changes to `Gitlab::GithubImport::Client` so that it can be used with Github Personal Access Tokens without the need for OAuth.
* Added UI to collect Personal Access Token from user.
* Detect if the user has logged in with GitHub and use OAuth to skip the Personal Access Token form.

## Are there points in the code the reviewer needs to double check?

Twin Omnibus MR: https://gitlab.com/gitlab-org/omnibus-gitlab/merge_requests/774

## What are the relevant issue numbers?

Closes #13970.

## Screenshots

### GitHub import is configured

![github_import_configured](/uploads/151e4f0edf3f87bfa03c2d97dda8b3d8/github_import_configured.png)

-----

### GitHub import is not configured

![github_import_not_configured](/uploads/cb129f7e2ffe66cceb28ccd9af480284/github_import_not_configured.png)

-----

## Does this MR meet the acceptance criteria?

- [x] [CHANGELOG](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/CHANGELOG) entry added
- [x] [Documentation created/updated](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/doc/development/doc_styleguide.md)
- Tests
  - [x] Added for this feature/bug
  - [ ] All builds are passing
- [ ] Conform by the [style guides](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/CONTRIBUTING.md#style-guides)
- [x] Branch has no merge conflicts with `master` (if you do - rebase it please)
- [x] [Squashed related commits together](https://git-scm.com/book/en/Git-Tools-Rewriting-History#Squashing-Commits)

See merge request !4938

Fix wrong line in changelog

## What does this MR do?

Fix a wrong line in the changelog



See merge request !5008

Fix restore warning message

## What does this MR do?

Fix the restore Rake task so it properly outputs the database warning. This is a pretty important warning and it was not even being output. After this fix, the output looks like the screenshot below.

![Screen_Shot_2016-06-28_at_3.53.46_PM](/uploads/d250189d39fcacd0c8ec0aacf9cd930d/Screen_Shot_2016-06-28_at_3.53.46_PM.png)

See merge request !4980

Advertise the PAT as an alternative unless GH import is not configured.
Signed-off-by: Rémy Coutable <remy@rymai.me>

This stands as an alternative to using OAuth to access a user's Github
repositories.  This is setup in such a way that it can be used without OAuth
configuration.

From a UI perspective, the how to import modal has been replaced by a full
page, which includes a form for posting a personal access token back to the
Import::GithubController.

If the user has logged in via GitHub, skip the Personal Access Token and go
directly to Github for an access token via OAuth.

Updated breakpoint for sidebar pinning

## What does this MR do?

Updates the breakpoint for sidebar pinning to 1024px.

Think we will have the same issue as before when picking into stable with `$window` not being defined.

See merge request !5019

Project dashboard appears to be loading tags on every request

See merge request !4996

Make Rack::Request use our trusted proxies when filtering IP addresses

## What does this MR do?

This allows us to control the trusted proxies while deployed in a private network.

## Are there points in the code the reviewer needs to double check?

If we want to limit what is impacted, we can do this specifically for the rack_attack request object.

## Why was this MR needed?

Normally Rack::Request will trust all private IPs as trusted proxies, which can cause problems if your users are connection on you network via private IP ranges.
    
Normally in a rails app this is handled by action_dispatch request, but rack_attack is specifically using the Rack::Request object instead.

## What are the relevant issue numbers?

Fixes https://gitlab.com/gitlab-org/gitlab-ce/issues/17550

## Does this MR meet the acceptance criteria?

- [x] [CHANGELOG](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/CHANGELOG) entry added
- [ ] ~~[Documentation created/updated](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/doc/development/doc_styleguide.md)~~
- [ ] ~~API support added~~
- Tests
  - [x] Added for this feature/bug
  - [x] All builds are passing
- [x] Conform by the [style guides](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/CONTRIBUTING.md#style-guides)
- [ ] Branch has no merge conflicts with `master` (if you do - rebase it please)
- [ ] [Squashed related commits together](https://git-scm.com/book/en/Git-Tools-Rewriting-History#Squashing-Commits)


\cc @stanhu

See merge request !4958

Remove unnecessary parens and other code style fixes

This MR is based on reviewers` comments to https://gitlab.com/gitlab-org/gitlab-ee/merge_requests/440

See merge request !5015

Enable Style/UnneededCapitalW Rubocop cop

## What does this MR do?

This MR enables Rubocop cop that checks if `%W[]`, which supports interpolation, is needed.

## What are the relevant issue numbers?

#17478 

See merge request !5010

Expiry date on pinned nav cookie

## What does this MR do?

Adds an expiry date far into the future for the pinned nav cookie so that it survives logout & browser closing.

See merge request !5009

When pushing commits to existing branches we don’t
need to flush branch git data (branch names / counts)

When flushes the cache when pushing commits skip to
flush branch and tag git data (names / counts) because
those operations are managed explicitly in each case

Repopulated expired cache as soon as possible

Global Ajax error handler

## What does this MR do?
Introduces a new global Ajax error handler to show a flash warning about the error detail of XHR requests which failed with status code 404 and 500

## Are there points in the code the reviewer needs to double check?
Double check the wording.

## Why was this MR needed?
A global solution for the problem in the #17880

## What are the relevant issue numbers?
Fixes #17880 

## Screenshots (if relevant)

For requests failed with 404 - 500 

![Screen_Shot_2016-06-21_at_00.07.26](/uploads/04bb3a5a958c3d21aef4fd12bd3d105a/Screen_Shot_2016-06-21_at_00.07.26.png)

For requests failed with 401

![Screen_Shot_2016-06-21_at_00.08.30](/uploads/25cc885ba388f4c6f4c555fa338e1a63/Screen_Shot_2016-06-21_at_00.08.30.png)

See merge request !4797

Loop all disks when displaying system info. Closes #18886



See merge request !4983

Remove coveralls as its unused

This gem is unused so could be removed.

@dzaporozhets @connorshea  We've discussed this some time ago on Slack

See merge request !5001

Implement multiple repository mount points

See merge request !4578