Skip check_initd_configured_correctly on omnibus installs

This was causing the task `gitlab-rake gitlab:incoming_email:check`
to fail.

See merge request !1396

Add better deprecation notice for the upgrader. Too easy to miss otherwise https://twitter.com/0x663030623472/status/646262552796594176

This was causing the task `gitlab-rake gitlab:incoming_email:check`
to fail.

8.0.0 is released; add 8.0.1 entry to CHANGELOG

[ci skip]

See merge request !1394

[ci skip]

Add to migration on what to do if you don't want your data.

If you don't want to migrate your CI data , remove the old builds directory.

See merge request !1392

Mention Reply by email in installation doc.

Added the "Enable Reply by email" section and moved the others around.

See merge request !1390

Ci migration doc improvements

Use export improvements in CI 8.0.1, make upgrades a more prominent part of the process, do not shut down GitLab during CI data import.

See merge request !1387

documentation on ssl verification in web hooks



See merge request !1386

Fix CI permissions

![Screen_Shot_2015-09-21_at_20.23.16](https://gitlab.com/gitlab-org/gitlab-ce/uploads/6f40699507d0dce148d0054a093f0d63/Screen_Shot_2015-09-21_at_20.23.16.png)

This fixes two problems:
- Allow developers to retry builds
- Hide advanced project options from CI page for non-admin users



See merge request !1379

Add missing rake and change nginx config for CI migration

/cc @marin

See merge request !1385

Reformat and copy edit the CI-to-CE migration guide

[ci skip]

See merge request !1335

[ci skip]

Tweak remaining CSS for Markdown preview

See merge request !1383

- Rename "Finishing Up" to "Nginx configuration"
- Add fourth "Finishing Up" section
- Add Troubleshooting section with a link to backup restoration docs
- Change a few indented blocks into fenced blocks so they're highlighted
  properly.
- Added Marin's suggestions for CI-to-CE-on-different-server section.

Missed a few items in !1378

Ensure raise_error expectations provide arguments

See merge request !1381

Fix Error 500 when comparing non-existing branches

Closes #2593

See merge request !1355

Remove deleted milestones from merge requests

This is related to !1348 but thought it would be useful as a separate MR. This MR removes deleted milestone IDs from any merge request.

Closes https://github.com/gitlabhq/gitlabhq/issues/9643

See merge request !1350