Upgrade Doorkeeper from 3.1.0 to 4.0.0.

Includes Rails 5 support and various bug fixes. Working toward #14286.

Changelog: https://github.com/doorkeeper-gem/doorkeeper/blob/master/NEWS.md#400

See merge request !5055

Remove current user link to the profile from sidebar

Because user avatar and link to the profile are duplicated in the header now

Related to https://gitlab.com/gitlab-org/gitlab-ce/merge_requests/4939 and https://gitlab.com/gitlab-org/gitlab-ce/issues/18544

cc @iamphill @jschatz1 

See merge request !5077

Signed-off-by: Dmitriy Zaporozhets <dmitriy.zaporozhets@gmail.com>

Signed-off-by: Dmitriy Zaporozhets <dmitriy.zaporozhets@gmail.com>

Signed-off-by: Dmitriy Zaporozhets <dmitriy.zaporozhets@gmail.com>

Add profile settings link to header user dropdown

It allows you to get to profile settings right from avatar without triggering sidebar 

Based on https://gitlab.com/gitlab-org/gitlab-ce/merge_requests/5077#note_12878162 

See merge request !5090

Signed-off-by: Dmitriy Zaporozhets <dmitriy.zaporozhets@gmail.com>

Instrument cache fetch hit and misses

See merge request !4993

Fix wording around NGINX Shibboleth setup

![image](/uploads/de69ad7a056083ab4ca337d9cacad6e2/image.png)

__________

![image](/uploads/bd8081aa0e3a7bd0568267c4a485df5d/image.png)



See merge request !5034

Add missing privileges to MySQL database

Closes gitlab-org/gitlab-ce#19321

See merge request !5079

Add index on both Award Emoji user and name

See merge request !5061

[ci skip]

Move global ci entries handling from legacy to new config

## What does this MR do?

This MR moves responsibility of handling global CI config entries (like `image`, `services`), from legacy `GitlabCiYamlProcessor` to new CI Config

## Why was this MR needed?

This is the next iteration of CI configuration refactoring

## What are the relevant issue numbers?

#15060

## Does this MR meet the acceptance criteria?

- Tests
  - [x] Added for this feature/bug
  - [x] All builds are passing
- [x] Conform by the [style guides](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/CONTRIBUTING.md#style-guides)
- [x] Branch has no merge conflicts with `master` (if you do - rebase it please)

See merge request !4820

Assert against `ActionMailer::Base.deliveries` relatively

- Closes #19496 
- Fixes `master` build


See merge request !5082

- Look for a `change` in its size rather than asserting against an
  actual size.

- This previously failed because another spec had an email in
  `ActionMailer::Base.deliveries`, which failed this `be_nil` assertion.

Add troubleshooting section for SMTP settings



See merge request !5046

Added user avatar to header

## What does this MR do?

Adds  the users avatar to the header with a dropdown for profile & sign out.

## What are the relevant issue numbers?

Closes #18543 

## Screenshots (if relevant)

![Screen_Shot_2016-06-27_at_12.47.34](/uploads/852d0eb7075eefcf21f5cf5ff71a389a/Screen_Shot_2016-06-27_at_12.47.34.png)

![Screen_Shot_2016-06-27_at_12.47.36](/uploads/6cb29843d3a12bbf2d3ed2a7c9bde770/Screen_Shot_2016-06-27_at_12.47.36.png)

See merge request !4939

Handle custom Git hook result in GitLab UI

## What does this MR do?

This MR fixes https://gitlab.com/gitlab-org/gitlab-ce/issues/19190
It allows to show messages from git custom hooks

## Screenshots (if relevant)

![joxi_screenshot_1467651998090](/uploads/7f814523c96712c07b4f4b52c843aab3/joxi_screenshot_1467651998090.png)

See merge request !5073

Fix dead links in the docs (Jun 2016)

## What does this MR do?

Fix dead links in the docs found as of Jun 2016.

## Are there points in the code the reviewer needs to double check?

n/a

## Why was this MR needed?

This MR must improve UX on docs.gitlab.com.

## What are the relevant issue numbers?

Closes #19156 

## Does this MR meet the acceptance criteria?

- No [CHANGELOG](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/CHANGELOG) updated
- [x] [Documentation created/updated](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/doc/development/doc_styleguide.md)
- [x] Conform by the [style guides](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/CONTRIBUTING.md#style-guides)
- [x] Branch has no merge conflicts with `master` (if you do - rebase it please)
- [x] [Squashed related commits together](https://git-scm.com/book/en/Git-Tools-Rewriting-History#Squashing-Commits)

See merge request !4921

Upgrade rspec-rails from 3.4.2 to 3.5.0.

Also upgrade its dependencies. Includes Rails 5 support. Working toward #14286 

Changelogs: http://rspec.info/blog/2016/07/rspec-3-5-has-been-released/

See merge request !5051

Update README.md - SSH password can be changed with `ssh-keygen -p`

SSH password can be changed with `ssh-keygen -p`

See merge request !4152

Save artifacts sizes

## What does this MR do?

Introduce ci_builds.artifacts_size as an integer, so that it's easier to access than reading from the file again.

## What are the relevant issue numbers?

Closes #18869

See merge request !4964

Feedback:
https://gitlab.com/gitlab-org/gitlab-ce/merge_requests/4964/diffs#note_12867416

Guidelines:
https://gitlab.com/gitlab-org/gitlab-ce/blob/master/doc/development/testing.md#general-guidelines

> Use `context` to test branching logic.

Feedback from:
https://gitlab.com/gitlab-org/gitlab-ce/merge_requests/4964#note_12867273

Update spring to 1.7.2 to fix hanging rails console

## What does this MR do?
Update spring to 1.7.2.

## Why was this MR needed?
This fixes hanging rails console issue.

## Related
Fixes https://gitlab.com/gitlab-org/gitlab-development-kit/issues/127

## Does this MR meet the acceptance criteria?

- [ ] [CHANGELOG](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/CHANGELOG) entry added
- [ ] [Documentation created/updated](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/doc/development/doc_styleguide.md)
- [ ] API support added
- Tests
  - [ ] Added for this feature/bug
  - [ ] All builds are passing
- [ ] Conform by the [style guides](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/CONTRIBUTING.md#style-guides)
- [ ] Branch has no merge conflicts with `master` (if you do - rebase it please)
- [ ] [Squashed related commits together](https://git-scm.com/book/en/Git-Tools-Rewriting-History#Squashing-Commits)

See merge request !5066

More descriptive message for git hooks and file locks

## What does this MR do?
Most of the benefits will be in GitLab EE because we have git hooks there (push rules) and file lock features.
Instead of showing "Git operation was rejected by #{hook_name} hook" the actual problem description will be shown.
Also you will see a clear message when you edit locked file.

## Why was this MR needed?

Because we don't want to confuse our users

## What are the relevant issue numbers?

https://gitlab.com/gitlab-org/gitlab-ee/issues/713


See merge request !5067

* upstream/master: (175 commits)
  Document Repository#keep_around
  Don't garbage collect commits that have related DB records like comments
  Update CHANGELOG
  Update RedCloth to 4.3.2 for CVE-2012-6684
  Fix typo in Merge Requests API documentation
  Downgrade to Redis 3.2.2 due to massive memory leak with Sidekiq
  Enable Style/EmptyLines cop, remove redundant ones
  Update CHANGELOG
  Cache results from jQuery selectors to retrieve namespace name
  Fix import button when import fail due the namespace already been taken
  Fix snippets comments not displayed
  Fix emoji paths in relative root configurations
  Exclude requesters from Project#members, Group#members and User#members
  Upgrade Thin from 1.6.1 to 1.7.0.
  Many squashed commits
  Cache autocomplete results
  Upgrade Sidekiq from 4.1.2 to 4.1.4.
  Upgrade seed-fu from 2.3.5 to 2.3.6
  use has_many relationship with events
  Support creating a todo on issuables via API
  ...

https://gitlab.com/gitlab-org/gitlab-ce/merge_requests/4964#note_12861588

https://gitlab.com/gitlab-org/gitlab-ce/merge_requests/4964#note_12861577

Don't garbage collect commits that have related DB records like comments

Closes #13524

Also needed for https://gitlab.com/gitlab-org/gitlab-ce/merge_requests/4101.

See merge request !5062