Bug #46322 Sporadic timeout in mysql_upgrade.test

Apparently caused by logging to table
Turn on logging to file only, add to .opt file for tests needing log to table

mysql-test/mysql-test-run.pl

@@ -4105,8 +4105,8 @@ sub mysqld_arguments ($$$) {
 
   if ( $mysql_version_id >= 50106 )
   {
-    # Turn on logging to both tables and file
-    mtr_add_arg($args, "--log-output=table,file");
+    # Turn on logging to file
+    mtr_add_arg($args, "--log-output=file");
   }
 
   # Check if "extra_opt" contains skip-log-bin

mysql-test/t/events_logs_tests-master.opt

---log-slow-queries
+--log-output=table,file --log-slow-queries

mysql-test/t/log_tables-master.opt

---log-slow-queries
+--log-output=table,file --log-slow-queries

mysql-test/t/ps-master.opt

---log-slow-queries --log-long-format --log-queries-not-using-indexes
+--log-output=table,file --log-slow-queries --log-long-format --log-queries-not-using-indexes

mysql-test/t/show_check-master.opt

---log-slow-queries --log-long-format --log-queries-not-using-indexes --myisam-recover=""
+--log-output=table,file --log-slow-queries --log-long-format --log-queries-not-using-indexes --myisam-recover=""

mysql-test/t/status-master.opt

+--log-output=table,file