After-merge fixes for MySQL 5.1.41 merge into MariaDB.
Makefile.am: Fix incorrect automerges. mysql-test/mysql-test-run.pl: Fix bad merge. We revert some of the MySQL-side changes, as the problem is that they may accidentally ignore some warnings in mysqld.err that should be reported. Also remove some differences between MySQL and MariaDB where there is no semantic difference (to make future merges easier).
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