Removed extra files -- will re-add later

post-processor/compress/LICENSE

-The MIT License (MIT)
-
-Copyright (c) 2014 Vasiliy Tolstov
-
-Permission is hereby granted, free of charge, to any person obtaining a copy
-of this software and associated documentation files (the "Software"), to deal
-in the Software without restriction, including without limitation the rights
-to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
-copies of the Software, and to permit persons to whom the Software is
-furnished to do so, subject to the following conditions:
-
-The above copyright notice and this permission notice shall be included in all
-copies or substantial portions of the Software.
-
-THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
-IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
-FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
-AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
-LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
-OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
-SOFTWARE.

post-processor/compress/benchmark.go

-// +build ignore
-
-package main
-
-import (
-	"compress/flate"
-	"compress/gzip"
-	"fmt"
-	"io"
-	"io/ioutil"
-	"os"
-	"runtime"
-	"testing"
-
-	"github.com/biogo/hts/bgzf"
-	"github.com/klauspost/pgzip"
-	"github.com/pierrec/lz4"
-)
-
-type Compressor struct {
-	r  *os.File
-	w  *os.File
-	sr int64
-	sw int64
-}
-
-func (c *Compressor) Close() error {
-	var err error
-
-	fi, _ := c.w.Stat()
-	c.sw = fi.Size()
-	if err = c.w.Close(); err != nil {
-		return err
-	}
-
-	fi, _ = c.r.Stat()
-	c.sr = fi.Size()
-	if err = c.r.Close(); err != nil {
-		return err
-	}
-
-	return nil
-}
-
-func NewCompressor(src, dst string) (*Compressor, error) {
-	r, err := os.Open(src)
-	if err != nil {
-		return nil, err
-	}
-
-	w, err := os.Create(dst)
-	if err != nil {
-		r.Close()
-		return nil, err
-	}
-
-	c := &Compressor{r: r, w: w}
-	return c, nil
-}
-
-func main() {
-
-	runtime.GOMAXPROCS(runtime.NumCPU())
-
-	var resw testing.BenchmarkResult
-	var resr testing.BenchmarkResult
-
-	c, err := NewCompressor("/tmp/image.r", "/tmp/image.w")
-	if err != nil {
-		panic(err)
-	}
-	resw = testing.Benchmark(c.BenchmarkGZIPWriter)
-	c.w.Seek(0, 0)
-	resr = testing.Benchmark(c.BenchmarkGZIPReader)
-	c.Close()
-	fmt.Printf("gzip:\twriter %s\treader %s\tsize %d\n", resw.T.String(), resr.T.String(), c.sw)
-
-	c, err = NewCompressor("/tmp/image.r", "/tmp/image.w")
-	if err != nil {
-		panic(err)
-	}
-	resw = testing.Benchmark(c.BenchmarkBGZFWriter)
-	c.w.Seek(0, 0)
-	resr = testing.Benchmark(c.BenchmarkBGZFReader)
-	c.Close()
-	fmt.Printf("bgzf:\twriter %s\treader %s\tsize %d\n", resw.T.String(), resr.T.String(), c.sw)
-
-	c, err = NewCompressor("/tmp/image.r", "/tmp/image.w")
-	if err != nil {
-		panic(err)
-	}
-	resw = testing.Benchmark(c.BenchmarkPGZIPWriter)
-	c.w.Seek(0, 0)
-	resr = testing.Benchmark(c.BenchmarkPGZIPReader)
-	c.Close()
-	fmt.Printf("pgzip:\twriter %s\treader %s\tsize %d\n", resw.T.String(), resr.T.String(), c.sw)
-
-	c, err = NewCompressor("/tmp/image.r", "/tmp/image.w")
-	if err != nil {
-		panic(err)
-	}
-	resw = testing.Benchmark(c.BenchmarkLZ4Writer)
-	c.w.Seek(0, 0)
-	resr = testing.Benchmark(c.BenchmarkLZ4Reader)
-	c.Close()
-	fmt.Printf("lz4:\twriter %s\treader %s\tsize %d\n", resw.T.String(), resr.T.String(), c.sw)
-
-}
-
-func (c *Compressor) BenchmarkGZIPWriter(b *testing.B) {
-	cw, _ := gzip.NewWriterLevel(c.w, flate.BestSpeed)
-	b.ResetTimer()
-
-	_, err := io.Copy(cw, c.r)
-	if err != nil {
-		b.Fatal(err)
-	}
-	cw.Close()
-	c.w.Sync()
-}
-
-func (c *Compressor) BenchmarkGZIPReader(b *testing.B) {
-	cr, _ := gzip.NewReader(c.w)
-	b.ResetTimer()
-
-	_, err := io.Copy(ioutil.Discard, cr)
-	if err != nil {
-		b.Fatal(err)
-	}
-}
-
-func (c *Compressor) BenchmarkBGZFWriter(b *testing.B) {
-	cw, _ := bgzf.NewWriterLevel(c.w, flate.BestSpeed, runtime.NumCPU())
-	b.ResetTimer()
-
-	_, err := io.Copy(cw, c.r)
-	if err != nil {
-		b.Fatal(err)
-	}
-	c.w.Sync()
-}
-
-func (c *Compressor) BenchmarkBGZFReader(b *testing.B) {
-	cr, _ := bgzf.NewReader(c.w, 0)
-	b.ResetTimer()
-
-	_, err := io.Copy(ioutil.Discard, cr)
-	if err != nil {
-		b.Fatal(err)
-	}
-}
-
-func (c *Compressor) BenchmarkPGZIPWriter(b *testing.B) {
-	cw, _ := pgzip.NewWriterLevel(c.w, flate.BestSpeed)
-	b.ResetTimer()
-
-	_, err := io.Copy(cw, c.r)
-	if err != nil {
-		b.Fatal(err)
-	}
-	cw.Close()
-	c.w.Sync()
-}
-
-func (c *Compressor) BenchmarkPGZIPReader(b *testing.B) {
-	cr, _ := pgzip.NewReader(c.w)
-	b.ResetTimer()
-
-	_, err := io.Copy(ioutil.Discard, cr)
-	if err != nil {
-		b.Fatal(err)
-	}
-}
-
-func (c *Compressor) BenchmarkLZ4Writer(b *testing.B) {
-	cw := lz4.NewWriter(c.w)
-	//	cw.Header.HighCompression = true
-	cw.Header.NoChecksum = true
-	b.ResetTimer()
-
-	_, err := io.Copy(cw, c.r)
-	if err != nil {
-		b.Fatal(err)
-	}
-	cw.Close()
-	c.w.Sync()
-}
-
-func (c *Compressor) BenchmarkLZ4Reader(b *testing.B) {
-	cr := lz4.NewReader(c.w)
-	b.ResetTimer()
-
-	_, err := io.Copy(ioutil.Discard, cr)
-	if err != nil {
-		b.Fatal(err)
-	}
-}