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Levin Zimmermann
wendelin
Commits
83c69678
Commit
83c69678
authored
Nov 17, 2024
by
Levin Zimmermann
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Demonstrate how resizing needs less disk space than creating orphans
parents
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t_zbigarray_resize.py
t_zbigarray_resize.py
+80
-0
t_zbigarray_set_none.py
t_zbigarray_set_none.py
+84
-0
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t_zbigarray_resize.py
0 → 100644
View file @
83c69678
import
os
import
sys
from
golang
import
defer
,
func
import
numpy
as
np
import
transaction
import
ZODB
,
ZODB
.
FileStorage
from
wendelin.bigarray.array_zodb
import
ZBigArray
storage_path
=
"tzbigarray.fs"
try
:
os
.
remove
(
storage_path
)
except
:
pass
@
func
def
root
(
func
):
storage
=
ZODB
.
FileStorage
.
FileStorage
(
storage_path
,
pack_gc
=
False
)
db
=
ZODB
.
DB
(
storage
)
connection
=
db
.
open
()
root
=
connection
.
root
defer
(
connection
.
close
)
defer
(
db
.
close
)
defer
(
storage
.
close
)
func
(
root
,
storage
,
db
)
def
t
(
root
,
storage
,
db
):
def
_
(
msg
):
print
(
msg
+
'
\
n
'
)
#print("array: %s" % str(arr[:]))
print
(
"
\
t
shape: %s"
%
str
(
arr
.
shape
))
print
(
"
\
t
storage length: %s"
%
len
(
storage
))
print
(
"
\
t
storage size: %s"
%
_getstoragesize
())
print
(
'
\
n
'
)
arr
=
root
.
zbigarray
=
ZBigArray
(
shape
=
[
0
,
2
],
dtype
=
int
)
transaction
.
commit
()
_
(
"Create new ZBigArray"
)
_append_zblk
(
arr
)
_
(
"Append ~one ZBlk to ZBigAray"
)
db
.
pack
()
_
(
"Pack database (1)"
)
arr
.
resize
((
0
,
2
))
transaction
.
commit
()
_
(
"Resize array (set length to 0)"
)
_append_zblk
(
arr
)
_
(
"Add new data again to array (to have same size as before)"
)
db
.
pack
()
_
(
"Pack database (2)"
)
_append_zblk
(
arr
)
_
(
"Add more new data"
)
db
.
pack
()
_
(
"Pack database (3)"
)
def
_append_zblk
(
arr
,
size
=
2
):
elements
=
200000
# roughly the size of 1xZBlk0
arr
.
append
([[
0
for
_
in
range
(
size
)]
for
_
in
range
(
int
(
elements
/
size
))])
transaction
.
commit
()
def
_getstoragesize
():
return
os
.
path
.
getsize
(
storage_path
)
if
__name__
==
"__main__"
:
root
(
t
)
t_zbigarray_set_none.py
0 → 100644
View file @
83c69678
import
os
import
sys
from
golang
import
defer
,
func
import
numpy
as
np
import
transaction
import
ZODB
,
ZODB
.
FileStorage
from
wendelin.bigarray.array_zodb
import
ZBigArray
storage_path
=
"tzbigarray.fs"
try
:
os
.
remove
(
storage_path
)
except
:
pass
@
func
def
root
(
func
):
storage
=
ZODB
.
FileStorage
.
FileStorage
(
storage_path
,
pack_gc
=
False
)
db
=
ZODB
.
DB
(
storage
)
connection
=
db
.
open
()
root
=
connection
.
root
defer
(
connection
.
close
)
defer
(
db
.
close
)
defer
(
storage
.
close
)
func
(
root
,
storage
,
db
)
def
t
(
root
,
storage
,
db
):
def
_
(
msg
):
print
(
msg
+
'
\
n
'
)
#print("array: %s" % str(arr[:]))
print
(
"
\
t
shape: %s"
%
str
(
arr
.
shape
))
print
(
"
\
t
storage length: %s"
%
len
(
storage
))
print
(
"
\
t
storage size: %s"
%
_getstoragesize
())
print
(
'
\
n
'
)
arr
=
root
.
zbigarray
=
ZBigArray
(
shape
=
[
0
,
2
],
dtype
=
int
)
transaction
.
commit
()
_
(
"Create new ZBigArray (1)"
)
_append_zblk
(
arr
)
_
(
"Append ~one ZBlk to ZBigAray"
)
db
.
pack
()
_
(
"Pack database (1)"
)
root
.
zbigarray
=
None
transaction
.
commit
()
_
(
"De-refer initial ZBigArray"
)
arr
=
root
.
zbigarray
=
ZBigArray
(
shape
=
[
0
,
2
],
dtype
=
int
)
transaction
.
commit
()
_
(
"Create new ZBigArray (2)"
)
_append_zblk
(
arr
)
_
(
"Add new data to newly created array"
)
db
.
pack
()
_
(
"Pack database (2)"
)
_append_zblk
(
arr
)
_
(
"Add more new data"
)
db
.
pack
()
_
(
"Pack database (3)"
)
def
_append_zblk
(
arr
,
size
=
2
):
elements
=
200000
# roughly the size of 1xZBlk0
arr
.
append
([[
0
for
_
in
range
(
size
)]
for
_
in
range
(
int
(
elements
/
size
))])
transaction
.
commit
()
def
_getstoragesize
():
return
os
.
path
.
getsize
(
storage_path
)
if
__name__
==
"__main__"
:
root
(
t
)
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