Update CHANGELOG-EE.md for 9.3.1-ee

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Update CHANGELOG-EE.md for 9.3.1-ee
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380ac200 · Clement Ho · 3cc1ba9d · 380ac200
Commit 380ac200 authored Jun 26, 2017 by Clement Ho
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+## 9.3.1 (2017-06-26)
+- Geo: fix removal of repositories from disk on secondary nodes. !2210
+- Fix Geo middleware to work properly with multiple requests.
 ## 9.3.0 (2017-06-22)
 - Per user/group access levels for Protected Tags. !1629