Resolve "Cycle analytics date filter is not working"

Fixes https://gitlab.com/gitlab-org/gitlab-ce/issues/22892

See merge request !6906
Signed-off-by: Rémy Coutable <remy@rymai.me>

Fix pipeline graph hidden on commit and mr pages

## What does this MR do?

Dynamically invokes `new gl.Pipelines();` when an MR `builds` tab is clicked.

Dispatches `new gl.Pipelines();` on a `commit#builds` page.

## Are there points in the code the reviewer needs to double check?

## Why was this MR needed?

The pipeline graph was hidden on commit and mr pages

## Screenshots (if relevant)

Commit page:
![Screen_Shot_2016-10-14_at_18.16.18](/uploads/ee11dea0825d1489dc167292e16c8f41/Screen_Shot_2016-10-14_at_18.16.18.png)

MR:
![Screen_Shot_2016-10-14_at_18.16.39](/uploads/602c2fce2397c799bedb757bfd3010af/Screen_Shot_2016-10-14_at_18.16.39.png)

## Does this MR meet the acceptance criteria?

- [ ] [CHANGELOG](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/CHANGELOG) entry added
- [ ] [Documentation created/updated](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/doc/development/doc_styleguide.md)
- [ ] API support added
- Tests
  - [ ] Added for this feature/bug
  - [ ] All builds are passing
- [ ] Conform by the [merge request performance guides](http://docs.gitlab.com/ce/development/merge_request_performance_guidelines.html)
- [ ] Conform by the [style guides](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/CONTRIBUTING.md#style-guides)
- [ ] Branch has no merge conflicts with `master` (if it does - rebase it please)
- [ ] [Squashed related commits together](https://git-scm.com/book/en/Git-Tools-Rewriting-History#Squashing-Commits)

## What are the relevant issue numbers?

Closes #23325

See merge request !6895
Signed-off-by: Rémy Coutable <remy@rymai.me>

Fix bug where e-mails were not being sent out via Sidekiq

Fix bug where e-mails were not being sent out via Sidekiq

By default, ActionMailer uses the "mailers" queue, but this entry
was not included in the list of queues for Sidekiq to use.

For more details:

* https://github.com/plataformatec/devise/wiki/How-To:-Send-devise-emails-in-background-(Resque,-Sidekiq-and-Delayed::Job)
* http://guides.rubyonrails.org/active_job_basics.html

See merge request !7053

This reverts commit eb54c711.

Don't autolink unsafe protocols

Closes https://gitlab.com/gitlab-org/gitlab-ce/issues/23153

See merge request !2013

Use separate queues for all Sidekiq workers

## What does this MR do?

This MR updates all workers so that they (mostly) use their own Sidekiq queues. This in turn allows us to monitor queues more accurately and in the future impose queue specific throttles, limits, etc.

This is a critical part we need in 8.13, despite it being so close to release day.

See https://gitlab.com/gitlab-org/gitlab-ce/issues/23370 for more information.

## Does this MR meet the acceptance criteria?

- [x] [CHANGELOG](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/CHANGELOG.md) entry added
- [x] [Documentation created/updated](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/doc/development/doc_styleguide.md)
- [x] Conform by the [merge request performance guides](http://docs.gitlab.com/ce/development/merge_request_performance_guidelines.html)
- [x] Conform by the [style guides](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/CONTRIBUTING.md#style-guides)
- [x] Branch has no merge conflicts with `master` (if it does - rebase it please)
- [x] [Squashed related commits together](https://git-scm.com/book/en/Git-Tools-Rewriting-History#Squashing-Commits)

## What are the relevant issue numbers?

https://gitlab.com/gitlab-org/gitlab-ce/issues/23370

See merge request !7006

Signed-off-by: Rémy Coutable <remy@rymai.me>

Fixed compare ellipsis messing with layout

## What does this MR do?

Fixed a bug where the ellipsis would cause the form to mess with the layout.

## Screenshots (if relevant)

![Screen_Shot_2016-10-21_at_13.45.37](/uploads/d1dc18d294dace599b8036541b70ccaf/Screen_Shot_2016-10-21_at_13.45.37.png)

See merge request !7042

Change "Group#web_url" to return "/groups/twitter" rather than "/twitter"

Fixes #23527

See merge request !7035

Disable warming of the asset cache in Spinach tests under CI

I suspect some combination of Knapsack tests cause no regular Rack tests
to be loaded (i.e. all JavaScript tests), which leads to the error:

ArgumentError: rack-test requires a rack application, but none was given

In CI, we precompile all the assets so there is no need to warm the
asset cache in any case.

Closes #23613

See merge request !7033

Fix broken label uniqueness label migration

The previous implementation of the migration failed on staging because
the migration was attempted to remove labels from projects that did not
actually have duplicates. This occurred because the SQL query did not
account for the project ID when selecting the labels.

To replicate the problem:

1. Disable the uniqueness validation in app/models/label.rb.
2. Create a duplicate label "bug" in project A.
3. Create the same label in project B with label "bug".

The migration will attempt to remove the label in B even if there are no duplicates.

To fix the issue, include the project ID when selecting the labels.

Closes #23609

See merge request !7030

Use iid deployment refs

This fixes the 404, because `find_by` will return nil instead of throwing an error.

See merge request !7021

Ignore external issues when bulk assigning issues to author of merge request.

Fixes #23552

See merge request !7020

Preserve note_type and position for notes from emails

Closes #23208

See merge request !7010

Fix GitLab project import when a user has access only to their default namespace

## What does this MR do?

It fixes a bug when a namespace ID was not passed to `/import/gitlab_project/new` page. It occurred when a user have no choice of the namespace, so we did not render the input for namespace ID. This MR introduces a hidden input for the described case.

## Does this MR meet the acceptance criteria?

- Tests
  - [x] Added for this feature/bug
  - [x] All builds are passing
- [x] Conform by the [merge request performance guides](http://docs.gitlab.com/ce/development/merge_request_performance_guidelines.html)
- [x] Conform by the [style guides](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/CONTRIBUTING.md#style-guides)
- [x] Branch has no merge conflicts with `master` (if it does - rebase it please)
- [x] [Squashed related commits together](https://git-scm.com/book/en/Git-Tools-Rewriting-History#Squashing-Commits)

## What are the relevant issue numbers?

Fixes #23507

See merge request !6995

Fixed issues with sticky mr tabs & sidebar

## What does this MR do?

- Fixes an issue where opening the sidebar wouldn't update the merge request tabs width & positioning
- Fixes issues when resizing the browser

Rather than updating the JS to react to different methods, this way allows the CSS to keep control of the positioning & sizes.

## What are the relevant issue numbers?

Closes #23504

See merge request !6990

Fix project member access levels

Migrate invalid project members (owner -> master)

Closes https://gitlab.com/gitlab-org/gitlab-ce/issues/18616

See merge request !6957
Signed-off-by: Rémy Coutable <remy@rymai.me>

Create protected branches bundle

Backport changes from https://gitlab.com/gitlab-org/gitlab-ee/merge_requests/645

See merge request !6909

Merge branch '22457-reset-filters-button-should-be-invisible-when-no-filters-are-active' into 'master'

`Reset filters` link should only be visible when filters are active

## Why was this MR needed?

`Reset filters` link is always visible.

Closes #22457

See merge request !6497

Fixes error 500 on Runners page (`ActionView::Template::Error (Missing partial kaminari/_paginator`)

Originally reported downstream: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=819903

See merge request !5701

[Doc] Fix `ref` parameter name for `commits/statuses`

The attribute to filter by branch or tag needs to be named `ref`, not `ref_name`. And indeed the attribute in the JSON response is `ref` (and not `ref_name`).

Tested on Gitlab CE 8.9.

See merge request !4876

Check that user has access to a given namespace to prevent leaking namespace names.

See merge request !2009

Restrict ProjectCacheWorker jobs to one per 15 min

## What does this MR do?

This restricts performing ProjectCacheWorker jobs to once every 15 minutes per project. The goal of this is to reduce disk load in the event of a lot of pushes happening in a short period of time. 

The impact is that cached data (e.g. commit count) may be updated less frequently. Furthermore it could mean that separate push payloads won't lead to e.g. READMEs being updated. Most of the cached data isn't updated very frequently, so this trade off should be worth it considering the alternative is a burning storage layer. 

In the future we'll have to flush caches in a smarter way. For example, refreshing the README cache could probably be done separately from the other caches with its own lease and such. See https://gitlab.com/gitlab-org/gitlab-ce/issues/23550 for more information.

See merge request !7017

Make label API spec independent of order

See merge request !7013

Resolve "Breaking a parameter table in Projects API doc"

## What does this MR do?

- A broken markdown in `Search for projects by name` is fixed.
    - cf. !6681
- Pagination is removed from `Search for projects by name` like other docs as it is shown in [/api/README.html](https://docs.gitlab.com/ce/api/README.html)

## Moving docs to a new location?

No.

## What are the relevant issue numbers?

Closes #23555

See merge request !7007

Remove show_menu_above attribute from issuable dropdowns.

Removes `show_menu_above` attribute form issueable dropdowns so they will drop down.

Fixes #23425 and #23317

See merge request !7001

Bump `omniauth-saml` to 1.7.0

Bump `omniauth-saml` to 1.7.0 to include security fixes and metadata support for IdP auto-configuration.

cc @dblessing @dewetblomerus

See merge request !6997

Fix a 500 error viewing an MR with a deleted source project

## What does this MR do?

Allows merged MRs to be shown without any 500 errors if the source project is removed

## Are there points in the code the reviewer needs to double check?

https://gitlab.com/gitlab-org/gitlab-ce/commit/31c37c6c38258684fc92e0d91119c33872e39034 fixed this for closed MRs only. I had trouble understanding the introduced helper and logic, so reverted it and keyed everything on the existence of the source project or branch directly.

commits.json returns a 500 error for a closed or merged MR; the approach taken in the above MR was to hide the commits... tab, so I've run with that.

For merged MRs, the commits (but not the pipeline data) are in the target project, so we *could* do better, but it's a fairly nasty intervention to make it happen.

## Why was this MR needed?

Viewing merged MRs should work even if the fork they came from has been deleted or unlinked.

## Screenshots (if relevant)

![Screen_Shot_2016-10-19_at_17.56.37](/uploads/1aeadd5147b9a4ad29b946b1c7ea52cb/Screen_Shot_2016-10-19_at_17.56.37.png)

## Does this MR meet the acceptance criteria?

- [x] [CHANGELOG](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/CHANGELOG.md) entry added
- [x] [Documentation created/updated](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/doc/development/doc_styleguide.md)
- [x] API support added
- Tests
  - [x] Added for this feature/bug
  - [ ] All builds are passing
- [x] Conform by the [merge request performance guides](http://docs.gitlab.com/ce/development/merge_request_performance_guidelines.html)
- [x] Conform by the [style guides](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/CONTRIBUTING.md#style-guides)
- [x] Branch has no merge conflicts with `master` (if it does - rebase it please)
- [x] [Squashed related commits together](https://git-scm.com/book/en/Git-Tools-Rewriting-History#Squashing-Commits)

## What are the relevant issue numbers?

Closes #23341

See merge request !6991

Update duration at the end of pipeline

## What does this MR do?
Moves duration calculation to be done only once at the end of pipeline processing.
Currently this is done every one build.

## Why was this MR needed?
This is the simplest thing that we can do before properly implementing duration calculation: https://gitlab.com/gitlab-org/gitlab-ce/issues/23523#note_17145614

This is ~Performance improvement that significantly affects: http://performance.gitlab.net/dashboard/db/sidekiq-workers?var-worker=PipelineUpdateWorker%23perform&var-database=Production&from=now-1h&to=now

See merge request !6987

Keep around commits only on pipeline create

## What does this MR do?
Since the pipeline SHA doesn't change, we don't need to update keep arounds every save.

## Why was this MR needed?
This is minimal change to fix this: https://gitlab.com/gitlab-org/gitlab-ce/issues/23503

See merge request !6986

Revert issuable title reordering

Reverts !6503, and uses `to_reference` rather than `iid` for `Issues#show` and `Issues#edit` titles.

See merge request !6983

Fix name of feature that restricts access to builds traces

## What does this MR do?

This MR fixes the name of the feature that makes it possible to restrict build traces. This does not disable access to pipelines. Pipelines are still available so we should tie the name with builds, instead of using work "pipeline" there.

See merge request !6980

Improve error logging of MergeService

Relates to #23505

See merge request !6975

Fix 'No label' and 'Any label' filters

## What does this MR do?

Returns the `title`as the `id` for `No label`.

## Are there points in the code the reviewer needs to double check?

## Why was this MR needed?

Label filters not working as expected

## Screenshots (if relevant)

![2016-10-19_04.58.08](/uploads/3b079bf28299c1155e0243171ac008f6/2016-10-19_04.58.08.gif)

## Does this MR meet the acceptance criteria?

- [ ] [CHANGELOG](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/CHANGELOG) entry added
- [ ] [Documentation created/updated](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/doc/development/doc_styleguide.md)
- [ ] API support added
- Tests
  - [ ] Added for this feature/bug
  - [ ] All builds are passing
- [ ] Conform by the [merge request performance guides](http://docs.gitlab.com/ce/development/merge_request_performance_guidelines.html)
- [ ] Conform by the [style guides](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/CONTRIBUTING.md#style-guides)
- [ ] Branch has no merge conflicts with `master` (if it does - rebase it please)
- [ ] [Squashed related commits together](https://git-scm.com/book/en/Git-Tools-Rewriting-History#Squashing-Commits)

## What are the relevant issue numbers?


Closes #23375

See merge request !6974

Fix pipeline alignment

Before:   
<img src="/uploads/8169695c5e594ee3f42a73cc1a91fd1a/Screen_Shot_2016-10-18_at_6.58.49_PM.png" width="400px">

After:   
<img src="/uploads/d608380057ef66223925db3524f691fb/Screen_Shot_2016-10-18_at_7.04.15_PM.png" width="400px">

See merge request !6971