Reorganize parsiong of command line options so that first all options are
parsed in a loop, and only after that a module/file/command is executed.

This is needed as preparatory step for next patch: there we'll add
support for -W, and `-W arg` can be given multiple times and has to be
processed multiple times by creating multiple corresponding warning
filters. Because those warning filters has to be applied uniformly to
all 4 codepaths of execution phase (-m/-c/file/interactive console), it
makes sense to move execution phase to after options parsing and inject
common runtime preparatory steps right before that.

This logic generally applies not only to -W, but to all other python
options - e.g. -Q,-u,...