Improve build trace scroll controls

## What does this MR do?

The trace step buttons now correctly scroll to the top or bottom of the build trace, rather than jumping inconsistently and never full reaching the top due to the fixed position of the header/navigation area.

## Are there points in the code the reviewer needs to double check?

## Why was this MR needed?

Build trace UX

## Screenshots (if relevant)

![2016-09-09_20.04.32](/uploads/efee5145fb505f8c9ae2a4cf24d842d3/2016-09-09_20.04.32.gif)

## Does this MR meet the acceptance criteria?

- [ ] [CHANGELOG](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/CHANGELOG) entry added
- [ ] [Documentation created/updated](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/doc/development/doc_styleguide.md)
- [ ] API support added
- Tests
  - [ ] Added for this feature/bug
  - [ ] All builds are passing
- [ ] Conform by the [merge request performance guides](http://docs.gitlab.com/ce/development/merge_request_performance_guidelines.html)
- [ ] Conform by the [style guides](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/CONTRIBUTING.md#style-guides)
- [ ] Branch has no merge conflicts with `master` (if you do - rebase it please)
- [ ] [Squashed related commits together](https://git-scm.com/book/en/Git-Tools-Rewriting-History#Squashing-Commits)

## What are the relevant issue numbers?

Contributes to #21832.

See merge request !6288

Fixed large comments messing with diff table widths

## What does this MR do?

Fixes the width of the diff table so that the content inside it can't increase or decrease the width of the table cells.

## Screenshots (if relevant)

![Screen_Shot_2016-09-12_at_14.44.44](/uploads/2ca483399d867153e6ae608360ffea5f/Screen_Shot_2016-09-12_at_14.44.44.png)

## What are the relevant issue numbers?

Closes #20694

See merge request !6309

Ensure invitees are not returned in Members API

## What are the relevant issue numbers?

Closes #22065

See merge request !6370

Use gitlab-workhorse 0.8.2

Fixes rejected API git archive extensions; improves Sentry errors.

https://gitlab.com/gitlab-org/gitlab-workhorse/blob/master/CHANGELOG

See merge request !6388

Fix broken spec due to last_activity_at updates being throttled

In https://gitlab.com/gitlab-org/gitlab-ce/builds/4218398, the build failed because the last_activity_at column was only being updated once per hour. We
can fix this spec by stubbing out the throttling and adjusting the spec to test the right event timestamp.

See merge request !6424

Strip comments before sending keys to gitlab-shell

## Why was this MR needed?

https://gitlab.com/gitlab-org/gitlab-ce/issues/22167 encoding issues in comment text.

## What are the relevant issue numbers?

https://gitlab.com/gitlab-org/gitlab-ce/issues/22167

See merge request !6381

Hide jump to next discussion button on commit notes

## What are the relevant issue numbers?

Closes #22354

See merge request !6428

Fix "Unsubscribe" link in notification emails that is triggered by anti-virus

## What does this MR do?

* The unsubscribe link in an email body only unsubscribes automatically when logged in, otherwise the user is asked for a confirmation.
* The unsubscribe link in an email header unsubscribes automatically whether logged in or not.

## Are there points in the code the reviewer needs to double check?

This addresses all the comments from https://gitlab.com/gitlab-org/gitlab-ce/merge_requests/5241, I think!

## Why was this MR needed?

People were getting unsubscribed automatically by AV software.

## Screenshot

![Screen_Shot_2016-09-20_at_09.51.30](/uploads/083ee2865f1ad6c08e2ed97f1c4e7d0d/Screen_Shot_2016-09-20_at_09.51.30.png)

## Does this MR meet the acceptance criteria?

- [x] [CHANGELOG](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/CHANGELOG) entry added
- Tests
  - [x] Added for this feature/bug
  - [ ] All builds are passing
- [x] Conform by the [merge request performance guides](http://docs.gitlab.com/ce/development/merge_request_performance_guidelines.html)
- [x] Conform by the [style guides](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/CONTRIBUTING.md#style-guides)
- [x] Branch has no merge conflicts with `master` (if you do - rebase it please)
- [x] [Squashed related commits together](https://git-scm.com/book/en/Git-Tools-Rewriting-History#Squashing-Commits)

## What are the relevant issue numbers?

Fixes #17198.

See merge request !6223

Lets the user choose a namespace and name on Github imports

Fixes https://gitlab.com/gitlab-org/gitlab-ce/issues/14971

See merge request !5728

Use a ConnectionPool for Rails.cache on Sidekiq servers

See merge request !6429

Restrict last_activity_at updates to one per hour

This MR reduces the number of updates to `projects.last_activity_at` to once per hour.

Closes https://gitlab.com/gitlab-org/gitlab-ce/issues/22213

See merge request !6391

LFS support for ssh enabled

## What does this MR do?
This is follow-up after https://gitlab.com/gitlab-org/gitlab-ce/merge_requests/6043 which is falsely shown as merged due to: https://gitlab.com/gitlab-org/gitlab-ce/issues/22334

## Are there points in the code the reviewer needs to double check?

## Why was this MR needed?

## Screenshots (if relevant)

## Does this MR meet the acceptance criteria?

- [ ] [CHANGELOG](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/CHANGELOG) entry added
- [ ] [Documentation created/updated](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/doc/development/doc_styleguide.md)
- [ ] API support added
- Tests
  - [ ] Added for this feature/bug
  - [ ] All builds are passing
- [ ] Conform by the [merge request performance guides](http://docs.gitlab.com/ce/development/merge_request_performance_guidelines.html)
- [ ] Conform by the [style guides](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/CONTRIBUTING.md#style-guides)
- [ ] Branch has no merge conflicts with `master` (if you do - rebase it please)
- [ ] [Squashed related commits together](https://git-scm.com/book/en/Git-Tools-Rewriting-History#Squashing-Commits)

## What are the relevant issue numbers?

See merge request !6413

Fix download artifacts button link

## What does this MR do?

Fix download artifacts button link.

## Does this MR meet the acceptance criteria?

- [ ] [CHANGELOG](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/CHANGELOG) entry added
- Tests
  - [x] Added for this feature/bug

## What are the relevant issue numbers?

Closes #22294

See merge request !6407

Render stages in valid order

Currently stages in stages dropdown on builds page are not in valid order. It is important to display stages in other those are defined in the pipeline.

Fixes https://gitlab.com/gitlab-org/gitlab-ce/issues/21133

See merge request !6430

Frontend for Merge Request Diff

This merge request improves the UX for the merge request diff feature which was recently implemented here (https://gitlab.com/gitlab-org/gitlab-ce/merge_requests/6127). Specifically, it styles various parts of the diff feature to match the designs, it disables comment-related buttons in states where comments are disabled, and it adds a 'Show latest version' button for convenience.

## Are there points in the code the reviewer needs to double check?

I could use feedback on this MR's fidelity to the design.  

## Why was this MR needed?

Neccessary styling improvements for basic UX of this feature, and enabled comment buttons are not functional and thus need to be disabled in certain states.

## Screenshots (if relevant)

![57dd0755f0b14342305909](/uploads/318a44a3bc8b7fc5c9c6ef92ba92e511/57dd0755f0b14342305909.gif)

## Does this MR meet the acceptance criteria?

- [x] [CHANGELOG](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/CHANGELOG) entry added
- [x] [Documentation created/updated](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/doc/development/doc_styleguide.md)
- [x] API support added
- Tests
  - [x] Added for this feature/bug
  - [ ] All builds are passing
- [x] Conform by the [merge request performance guides](http://docs.gitlab.com/ce/development/merge_request_performance_guidelines.html)
- [x] Conform by the [style guides](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/CONTRIBUTING.md#style-guides)
- [x] Branch has no merge conflicts with `master` (if you do - rebase it please)
- [x] [Squashed related commits together](https://git-scm.com/book/en/Git-Tools-Rewriting-History#Squashing-Commits)

## What are the relevant issue numbers?

https://gitlab.com/gitlab-org/gitlab-ce/issues/21427
https://gitlab.com/gitlab-org/gitlab-ce/merge_requests/6127

cc: @jschatz1 

See merge request !6343

Fix processing of events when build finished.

Update pipeline after processing builds. Otherwise we can get into scenario where pipeline will be marked as running.

This solves a quite significant regression in Pipeline processing.

Proper fix is to move all this to Sidekiq Worker and process pipeline there.
I'll do it after 8.12 release.

See merge request !6410

Fix note form hint showing slash commands supported for commits

## What are the relevant issue numbers?

Closes #22218

See merge request !6368

Add optional 'author' param when making commits

This fulfills https://gitlab.com/gitlab-org/gitlab-ce/issues/20789 by adding the ability to specify a user's ID to be used as the author of a commit.

Closes https://gitlab.com/gitlab-org/gitlab-ce/issues/20789

See merge request !5822

Make CI to use the permission of the user who is trigger the build

This is continuation of https://gitlab.com/gitlab-org/gitlab-ce/merge_requests/5735, but with removed all LFS code that is added by: https://gitlab.com/gitlab-org/gitlab-ce/merge_requests/6043.

This also incorporates most of LFS code added in !6043 to simplify further merge.

See merge request !6409

Fix import/export database errors

Fixes protected branches errors when importing a project including them

Fixes https://gitlab.com/gitlab-org/gitlab-ce/issues/21295

Fixes https://gitlab.com/gitlab-org/gitlab-ce/issues/21799

See merge request !6099

Add support for dynamic environments

Implements proposal described in https://gitlab.com/gitlab-org/gitlab-ce/issues/21971.

Specifically:
- it adds a `.gitlab-ci.yml` configuration,
- it allows environment name to have slashes,
- it allows environment names to use CI predefined variables,
- it allows to specify URL from `.gitlab-ci.yml`,
- it allows the URL to use CI predefined variables,
- it introduces `environment_type` to allow to easily group environments in the future

See merge request !6323

Ensure validation messages are shown within the milestone form

Fixes a bug where upon entering data to create an invalid milestone via the Web UI or the API would raise an exception rather than render the validation messages

We'd rather render the validation messages to inform the user than raise an exception and result in a 422 error being displayed

Closes #22033

See merge request !6345

Reset pushes_since_gc counter before specs run to ensure starting point is 0

See merge request !6406

Render invalid template for open merge requests without source project

If source project was removed and merge request for some reason wasn't closed is rendered `invalid` template. Fix !6177

Fix #22248 

See merge request !6383

Add missing spec for ProtectedBranches::CreateService

While working on !6399, I noticed there was no spec for this class so I added one.

See merge request !6405

* Remove call to Milestone#save! instead just Milestone#save
* Add safety specs to stop a regression

Fixes #22033

Refactor boards_spec.rb to avoid code duplication

Originally created to address #21197, but !6224 solved the intermittent spec failures.

See merge request !6197