- 29 Apr, 2020 3 commits
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Kirill Smelkov authored
Zodbdump format is text-binary and is saved into files opened in binary mode. -> We have to emit bytes - not strings - into it, since otherwise on Python3 it would break. This needs qq support from pygolang[1] to be able to use qq with both string and bytestring format, e.g. for "hello %s" % qq(name), and b"hello %s" % qq(name) to give the same output irregardless of whether name is str or bytes. [1] nexedi/pygolang!1
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Kirill Smelkov authored
Zodbdump format is already described as semi text-binary in top-level zodbdump.py documentation. However zdump() docstring was referring to it as "text". Fix it and use binary to handle places where zdump is loaded/saved.
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Kirill Smelkov authored
%r has different output for strings and bytes on python3: In [1]: a = 'hello' In [2]: b = b'hello' In [3]: repr(a) Out[3]: "'hello'" In [4]: repr(b) Out[4]: "b'hello'" -> Use qq whose output is stable irregardless of whether input is string or bytes.
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- 13 Mar, 2020 1 commit
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Kirill Smelkov authored
zodbinfo: Provide "head" as command to query DB head; Turn "last_tid" into deprecated alias for head Similarly to go version: kirr/neo@151d8b79.
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- 14 Feb, 2020 1 commit
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Kirill Smelkov authored
Starting with upcoming ZODB 5.5.2 ZODB tries to preserve `extension_bytes` transaction metadata property in the raw form as it was stored on disk in the database: https://github.com/zopefoundation/ZODB/commit/2f8cc67a However now when running test/gen_testdata.py with ZODB with that patch (and gen_testdata.py refuses to work if it detects that ZODB does not properly supports .extension_bytes property because we want it to be present in the generated test database [1,2]) it now breaks: $ ./gen_testdata.py Traceback (most recent call last): File "./gen_testdata.py", line 230, in <module> main() File "./gen_testdata.py", line 224, in main gen_testdb("%s.fs" % dbname, zext=zext) File "./gen_testdata.py", line 194, in gen_testdb stor.tpc_begin(txn) File "/home/kirr/src/wendelin/z/ZODB/src/ZODB/BaseStorage.py", line 193, in tpc_begin ext = transaction.extension_bytes AttributeError: 'Transaction' object has no attribute 'extension_bytes' The breakage is because, as specified in ZODB interfaces[3,4], storage requires ZODB.IStorageTransactionMetaData, not transaction.ITransaction instance gen_testdata.py was using. The script used to work before just by luck. The fix is to convert transaction instance into storage transaction metadata object for the place where we talk to storage at raw level. HOWEVER, when checking regenerated database and its dump I noticed: ZODB >= 5.4.0 uses pickle protocol 3 on both python2 and python3 https://github.com/zopefoundation/ZODB/commit/12ee41c4 In other words it saves e.g. OID of an object as pickle binary, which decodes as bytes on py3 and zodbpickle.binary on py2 when decoding via zodbpickle. However it will result in *DecodeError* when decoding on py2 with standard pickle module. The latter means that ZODB3 will _fail_ to load data from test database, because ZODB3 - contrary to ZODB4 and ZODB5 - uses std pickle module, not zodbpickle. We still care about ZODB3 and in particular it is included into zodbtools test matrix: https://lab.nexedi.com/nexedi/zodbtools/blob/7bc0385e/tox.ini#L9-14 so we cannot break it. -> Temporarily patch ZODB at runtime to make sure it emits data with older protocol and without using zodbpickle.binary for oid, so that generated test database could be loaded on ZODB3 as well. gen_testdata.py now works with latest ZODB, but produces exactly the same bit-to-bit output as before. [1] https://lab.nexedi.com/nexedi/zodbtools/blob/7bc0385e/zodbtools/test/gen_testdata.py#L215-217 [2] https://lab.nexedi.com/nexedi/zodbtools/blob/7bc0385e/zodbtools/test/testutil.py#L31-63 [3] https://github.com/zopefoundation/ZODB/blob/5.5.1-35-gb5895a5c2/src/ZODB/interfaces.py#L815-L818 [4] https://github.com/zopefoundation/ZODB/blob/5.5.1-35-gb5895a5c2/src/ZODB/interfaces.py#L538-L575 /reviewed-on !15
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- 09 Jul, 2019 1 commit
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Kirill Smelkov authored
-> Use .[test] to refer to them. https://stackoverflow.com/a/41398850/9456786 /reviewed-by @jerome /reviewed-on nexedi/zodbtools!14
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- 03 Jun, 2019 1 commit
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Kirill Smelkov authored
@jerome, I was trying to make zodbtools work with Python3 and along that road picked some bits of your work from nexedi/zodbtools!12. At present the migration to Python3 is not complete, and even though now I have the answer to how handle strings in both python2/3 in compatible and reasonable way (I can share details if you are interested), I have to put that work on hold for some time and use https://pypi.org/project/pep3134 directly in wcfs tests, since getting all string details right, even after figuring on how to do it, will take time. Anyway the bits presented here should be ready for master and could be merged now. Could you please have a look? Thanks beforehand, Kirill /reviewed-on nexedi/zodbtools!13
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- 24 May, 2019 8 commits
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Kirill Smelkov authored
Zodbdump format is mixed text+binary so dumping to unicode stdout won't work. Based on patch by Jérome Perrin.
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Kirill Smelkov authored
Because on Py3: def test_dumpreader(): in_ = b"""\ txn 0123456789abcdef " " user "my name" description "o la-la..." extension "zzz123 def" obj 0000000000000001 delete obj 0000000000000002 from 0123456789abcdee obj 0000000000000003 54 adler32:01234567 - obj 0000000000000004 4 sha1:9865d483bc5a94f2e30056fc256ed3066af54d04 ZZZZ obj 0000000000000005 9 crc32:52fdeac5 ABC DEF! txn 0123456789abcdf0 " " user "author2" description "zzz" extension "qqq" """ r = DumpReader(BytesIO(in_)) t1 = r.readtxn() assert isinstance(t1, Transaction) > assert t1.tid == '0123456789abcdef'.decode('hex') E AttributeError: 'str' object has no attribute 'decode' test/test_dump.py:77: AttributeError Based on patch by Jérome Perrin.
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Kirill Smelkov authored
self = <zodbtools.util.CRC32Hasher object at 0x7f887ae465f8> def __init__(self): > self._h = crc32('') E TypeError: a bytes-like object is required, not 'str' util.py:208: TypeError Based on patch by Jérome Perrin.
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Kirill Smelkov authored
data = 'data1' def sha1(data): m = hashlib.sha1() > m.update(data) E TypeError: Unicode-objects must be encoded before hashing zodbtools/util.py:38: TypeError Based on patch by Jérome Perrin.
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Kirill Smelkov authored
s = b'\x03\xc4\x85v\x00\x00\x00\x00' def ashex(s): > return s.encode('hex') E AttributeError: 'bytes' object has no attribute 'encode' zodbtools/util.py:29: AttributeError s.encode('hex') used to work on Py2 but fails on Py3: In [1]: s = "abc" In [2]: b = b"def" In [3]: s.encode('hex') --------------------------------------------------------------------------- LookupError Traceback (most recent call last) <ipython-input-3-75ae843597fe> in <module>() ----> 1 s.encode('hex') LookupError: 'hex' is not a text encoding; use codecs.encode() to handle arbitrary codecs In [4]: b.encode('hex') --------------------------------------------------------------------------- AttributeError Traceback (most recent call last) <ipython-input-4-ec2fccff20bc> in <module>() ----> 1 b.encode('hex') AttributeError: 'bytes' object has no attribute 'encode' In [5]: import codecs In [6]: codecs.encode(b, 'hex') Out[6]: b'646566' In [7]: codecs.encode(s, 'hex') --------------------------------------------------------------------------- TypeError Traceback (most recent call last) /usr/lib/python3.7/encodings/hex_codec.py in hex_encode(input, errors) 14 assert errors == 'strict' ---> 15 return (binascii.b2a_hex(input), len(input)) 16 TypeError: a bytes-like object is required, not 'str' The above exception was the direct cause of the following exception: TypeError Traceback (most recent call last) <ipython-input-7-7fcb16cead4f> in <module>() ----> 1 codecs.encode(s, 'hex') TypeError: encoding with 'hex' codec failed (TypeError: a bytes-like object is required, not 'str') After the patch it works with bytes and raises for str. Fromhex does not need to be changed - it already uses codecs.decode way as originally added in dd959b28 (zodbdump += DumpReader - to read/parse zodbdump stream). Based on patch by Jérome Perrin.
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Kirill Smelkov authored
There is no cStringIO on Python3: test_dump.py:26: in <module> from cStringIO import StringIO E ModuleNotFoundError: No module named 'cStringIO' Based on patch by Jérome Perrin.
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Jérome Perrin authored
This makes zodb command driver tests added in the previous patch to pass on both python2 and python3.
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Jérome Perrin authored
---- kirr: factor running `zodb ...` into zodbrun + add test for `zodb -h`. Added test currently passes on py2, but fails on py3: out = <_io.TextIOWrapper encoding='UTF-8'> def usage(out): print("""\ Zodb is a tool for managing ZODB databases. Usage: zodb command [arguments] The commands are: """, file=out) cmdv = command_dict.keys() > cmdv.sort() E AttributeError: 'dict_keys' object has no attribute 'sort' zodbtools/zodb.py:55: AttributeError It will be fixed in the next patch.
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- 07 Mar, 2019 1 commit
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Jérome Perrin authored
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- 31 Jan, 2019 6 commits
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Jérome Perrin authored
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Jérome Perrin authored
---- kirr: use loggging as log and keep emitting warnings on one line.
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Jérome Perrin authored
this silents a warning about \w being unknown escape sequence ---- kirr: preserved _obj_re definition to be on 1 line.
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Jérome Perrin authored
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Jérome Perrin authored
until https://github.com/zopefoundation/ZODB/pull/183 gets merged, let's run also the tests for this, since we have support for this extension.
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Jérome Perrin authored
also simplify a bit definition as ZODB is common in all versions ---- kirr: - cover only last 2 py3 releases: 3.6 and 3.7 for now (3.8 is not yet released) - separate ZODB3 as it supports only python2. Py3 tests are failing for now and we'll be getting them to pass incrementally - step by step.
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- 30 Jan, 2019 3 commits
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Jérome Perrin authored
Using dateparser to support absolute and relative dates in natural language. /reviewed-by @kirr /reviewed-on !8
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Jérome Perrin authored
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Jérome Perrin authored
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- 11 Jan, 2019 2 commits
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Kirill Smelkov authored
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Kirill Smelkov authored
Fixes to get all tests passing with all ZODB versions we care about. Organize testing coverage for all cases via tox, similarly to wendelin.core . /reviewed-on !11
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- 10 Jan, 2019 4 commits
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Kirill Smelkov authored
Use tox to test with all kinds of ZODB. With preceding 3 patches tests pass with all versions of upstream ZODB. TODO: test coverage for both py2 and py3.
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Kirill Smelkov authored
maxtid is in ZODB.utils starting only from ZODB5. ZODB{3,4} want txn._extension, while ZODB5 deprecate it in favour of txn.extension.
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Kirill Smelkov authored
IStorageTransactionMetaData is ZODB5-only interface. Bug introduced in dd959b28 (zodbdump += DumpReader - to read/parse zodbdump stream).
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Kirill Smelkov authored
Currently we exercise zodbdump and zodbcommit+zodbdump with non-empty extensions, which works if ZODB is patched for txn.extension_bytes support, but fails on pristine ZODB. Support for txn.extension_bytes cannot get into upstream ZODB for more than a year: https://github.com/zopefoundation/ZODB/pull/183 https://github.com/zopefoundation/ZODB/pull/207 and even if it somehow will make it, it will likely be only in ZODB5, while we still care to support ZODB4 and ZODB3. Skipping zodbdump / zodbcommit tests, if a ZODB does not have txn.extension_bytes support, would result in significant reduction of zodbtools test coverage, because practically that is the current situation with all upstream ZODB{3,4,5}. Dropping test coverage for non-empty extensions is neither a good option. For those reason, let's rework the tests and test both zodbdump and zodbcommit with two scenarios: 1. on a test database where transactions extensions are always empty. This should work on all ZODB irregardless of whether txn.extension_bytes patch is there or not. 2. on a test database where transactions extensions are present. This should work if ZODB has txn.extension_bytes support, but if not, we can mark this case as xfail, since the failure is expected. This way we make the testsuite pass irregardless of whether txn.extension_bytes support is there, and we don't abandon dump/commit testing coverage. /helped-by Jérome Perrin <jerome@nexedi.com>
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- 09 Jan, 2019 2 commits
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Jérome Perrin authored
Fix for this kind of errors: ``` (env)$ zodb analyze demo.fs ffffffffffffffff.. # ø Processed 0 records in 0 transactions Traceback (most recent call last): File "/srv/slapgrid/slappart8/srv/runner/project/zodbtools/env/bin/zodb", line 11, in <module> load_entry_point('zodbtools', 'console_scripts', 'zodb')() File "/srv/slapgrid/slappart8/srv/runner/project/zodbtools/zodbtools/zodb.py", line 130, in main return command_module.main(argv) File "/srv/slapgrid/slappart8/srv/runner/project/zodbtools/zodbtools/zodbanalyze.py", line 305, in main report(analyze(path, use_dbm, delta_fs, tidmin, tidmax), csv) File "/srv/slapgrid/slappart8/srv/runner/project/zodbtools/zodbtools/zodbanalyze.py", line 102, in report print "Average record size is %7.2f bytes" % (rep.DBYTES * 1.0 / rep.OIDS) ZeroDivisionError: float division by zero ``` and also small fixes for python3 compatibility /reviewed-on !9
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Jérome Perrin authored
To keep a consistent output.
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- 08 Jan, 2019 6 commits
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Jérome Perrin authored
and use six.moves for python3 compatibility. Previously we were using "anydbm" which selects dbhash, gdbm or dbm, but opening the db with the f flag that's only valid for gdm, so de-facto we were supporting only gdbm.
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Jérome Perrin authored
this also solves the following error on python3: AttributeError: 'dict_keys' object has no attribute 'sort'
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Jérome Perrin authored
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Jérome Perrin authored
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Jérome Perrin authored
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Jérome Perrin authored
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- 07 Jan, 2019 1 commit
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Jérome Perrin authored
/reviewed-on nexedi/zodbtools!10
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