New --new-nid storage option for fast cloning

It is often faster to set up replicas by stopping a node (and any
underlying database server like MariaDB) and do a raw copy of the
database (e.g. with rsync). So far, it required to stop the whole
cluster and use tools like 'mysql' or sqlite3' to edit:
- the 'pt' table in databases,
- the 'config.nid' values of the new nodes.

With this new option, if you already have 1 replica, you can set up
new replicas with such fast raw copy, and without interruption of
service. Obviously, this implies less redundancy during the operation.

neo/client/app.py

@@ -226,8 +226,8 @@ class Application(ThreadedApplication):
                         self.notifications_handler,
                         node=node,
                         dispatcher=self.dispatcher)
-                p = Packets.RequestIdentification(
-                    NodeTypes.CLIENT, self.uuid, None, self.name, (), None)
+                p = Packets.RequestIdentification(NodeTypes.CLIENT,
+                    self.uuid, None, self.name, None, (), ())
                 try:
                     ask(conn, p, handler=handler)
                 except ConnectionClosed:
@@ -270,7 +270,7 @@ class Application(ThreadedApplication):
         conn = MTClientConnection(self, self.storage_event_handler, node,
                                   dispatcher=self.dispatcher)
         p = Packets.RequestIdentification(NodeTypes.CLIENT,
-            self.uuid, None, self.name, (), self.id_timestamp)
+            self.uuid, None, self.name, self.id_timestamp, (), ())
         try:
             self._ask(conn, p, handler=self.storage_bootstrap_handler)
         except ConnectionClosed:

neo/lib/bootstrap.py

@@ -26,7 +26,7 @@ class BootstrapManager(EventHandler):
     Manage the bootstrap stage, lookup for the primary master then connect to it
     """
 
-    def __init__(self, app, node_type, server=None, devpath=()):
+    def __init__(self, app, node_type, server=None, devpath=(), new_nid=()):
         """
         Manage the bootstrap stage of a non-master node, it lookup for the
         primary master node, connect to it then returns when the master node
@@ -34,6 +34,7 @@ class BootstrapManager(EventHandler):
         """
         self.server = server
         self.devpath = devpath
+        self.new_nid = new_nid
         self.node_type = node_type
         self.num_replicas = None
         self.num_partitions = None
@@ -44,7 +45,7 @@ class BootstrapManager(EventHandler):
     def connectionCompleted(self, conn):
         EventHandler.connectionCompleted(self, conn)
         conn.ask(Packets.RequestIdentification(self.node_type, self.uuid,
-            self.server, self.app.name, self.devpath, None))
+            self.server, self.app.name, None, self.devpath, self.new_nid))
 
     def connectionFailed(self, conn):
         EventHandler.connectionFailed(self, conn)

neo/lib/protocol.py

@@ -685,8 +685,10 @@ class RequestIdentification(Packet):
         PUUID('uuid'),
         PAddress('address'),
         PString('name'),
-        PList('devpath', PString('devid')),
         PFloat('id_timestamp'),
+        # storage:
+            PList('devpath', PString('devid')),
+            PList('new_nid', PNumber('offset')),
     )
 
     _answer = PStruct('accept_identification',

neo/master/app.py

@@ -196,7 +196,7 @@ class Application(BaseApplication):
             node_dict[NodeTypes.MASTER].append(node_info)
         return node_dict
 
-    def broadcastNodesInformation(self, node_list, exclude=None):
+    def broadcastNodesInformation(self, node_list):
         """
           Broadcast changes for a set a nodes
           Send only one packet per connection to reduce bandwidth
@@ -209,7 +209,7 @@ class Application(BaseApplication):
             # We don't skip pending storage nodes because we don't send them
             # the full list of nodes when they're added, and it's also quite
             # useful to notify them about new masters.
-            if node_list and node is not exclude:
+            if node_list:
                 node.send(Packets.NotifyNodeInformation(now, node_list))
 
     def broadcastPartitionChanges(self, cell_list):

neo/master/handlers/identification.py

@@ -17,14 +17,14 @@
 from neo.lib import logging
 from neo.lib.exception import PrimaryElected
 from neo.lib.handler import EventHandler
-from neo.lib.protocol import ClusterStates, NodeStates, NodeTypes, \
-    NotReadyError, Packets, ProtocolError, uuid_str
+from neo.lib.protocol import CellStates, ClusterStates, NodeStates, \
+    NodeTypes, NotReadyError, Packets, ProtocolError, uuid_str
 from ..app import monotonic_time
 
 class IdentificationHandler(EventHandler):
 
     def requestIdentification(self, conn, node_type, uuid,
-                              address, name, devpath, id_timestamp):
+                              address, name, id_timestamp, devpath, new_nid):
         app = self.app
         self.checkClusterName(name)
         if address == app.server:
@@ -77,6 +77,16 @@ class IdentificationHandler(EventHandler):
                 manager = app
             state, handler = manager.identifyStorageNode(
                 uuid is not None and node is not None)
+            if not address:
+                if app.cluster_state == ClusterStates.RECOVERING:
+                    raise NotReadyError
+                if uuid or not new_nid:
+                    raise ProtocolError
+                state = NodeStates.DOWN
+                # We'll let the storage node close the connection. If we
+                # aborted it at the end of the method, BootstrapManager
+                # (which is used by storage nodes) could see the closure
+                # and try to reconnect to a master.
             human_readable_node_type = ' storage (%s) ' % (state, )
         elif node_type == NodeTypes.MASTER:
             if app.election:
@@ -105,9 +115,15 @@ class IdentificationHandler(EventHandler):
             node.devpath = tuple(devpath)
         node.id_timestamp = monotonic_time()
         node.setState(state)
+        app.broadcastNodesInformation([node])
+        if new_nid:
+            changed_list = []
+            for offset in new_nid:
+                changed_list.append((offset, uuid, CellStates.OUT_OF_DATE))
+                app.pt._setCell(offset, node, CellStates.OUT_OF_DATE)
+            app.broadcastPartitionChanges(changed_list)
         conn.setHandler(handler)
         node.setConnection(conn, not node.isIdentified())
-        app.broadcastNodesInformation([node], node)
 
         conn.answer(Packets.AcceptIdentification(
             NodeTypes.MASTER,
@@ -118,11 +134,10 @@ class IdentificationHandler(EventHandler):
         handler._notifyNodeInformation(conn)
         handler.connectionCompleted(conn, True)
 
-
 class SecondaryIdentificationHandler(EventHandler):
 
     def requestIdentification(self, conn, node_type, uuid,
-                              address, name, devpath, id_timestamp):
+                              address, name, id_timestamp, devpath, new_nid):
         app = self.app
         self.checkClusterName(name)
         if address == app.server:

neo/master/handlers/master.py

@@ -38,7 +38,7 @@ class ElectionHandler(MasterHandler):
             super(ElectionHandler, self).connectionCompleted(conn)
             app = self.app
             conn.ask(Packets.RequestIdentification(NodeTypes.MASTER,
-                app.uuid, app.server, app.name, (), app.election))
+                app.uuid, app.server, app.name, app.election, (), ()))
 
     def connectionFailed(self, conn):
         super(ElectionHandler, self).connectionFailed(conn)

neo/storage/app.py

@@ -63,6 +63,11 @@ class Application(BaseApplication):
             help="do not delete data of discarded cells, which is useful for"
                  " big databases because the current implementation is"
                  " inefficient (this option should disappear in the future)")
+        _.bool('new-nid',
+            help="request a new NID from a cluster that is already"
+                 " operational, update the database with the new NID and exit,"
+                 " which makes easier to quickly set up a replica by copying"
+                 " the database of another node while it was stopped")
 
         _ = parser.group('database creation')
         _.int('i', 'nid',
@@ -118,10 +123,16 @@ class Application(BaseApplication):
         self.loadConfiguration()
         self.devpath = self.dm.getTopologyPath()
 
-        # force node uuid from command line argument, for testing purpose only
-        if 'nid' in config:
-            self.uuid = config['nid']
-            logging.node(self.name, self.uuid)
+        if config.get('new_nid'):
+            self.new_nid = [x[0] for x in self.dm.iterAssignedCells()]
+            if not self.new_nid:
+                sys.exit('database is empty')
+            self.uuid = None
+        else:
+            self.new_nid = ()
+            if 'nid' in config: # for testing purpose only
+                self.uuid = config['nid']
+                logging.node(self.name, self.uuid)
 
         registerLiveDebugger(on_log=self.log)
 
@@ -250,8 +261,9 @@ class Application(BaseApplication):
         pt = self.pt
 
         # search, find, connect and identify to the primary master
-        bootstrap = BootstrapManager(self, NodeTypes.STORAGE, self.server,
-                                     self.devpath)
+        bootstrap = BootstrapManager(self, NodeTypes.STORAGE,
+                                     None if self.new_nid else self.server,
+                                     self.devpath, self.new_nid)
         self.master_node, self.master_conn, num_partitions, num_replicas = \
             bootstrap.getPrimaryConnection()
         self.dm.setUUID(self.uuid)

neo/storage/checker.py

@@ -51,7 +51,7 @@ class Checker(object):
             else:
                 conn = ClientConnection(app, StorageOperationHandler(app), node)
                 conn.ask(Packets.RequestIdentification(NodeTypes.STORAGE,
-                    uuid, app.server, name, (), app.id_timestamp))
+                    uuid, app.server, name, app.id_timestamp, (), ()))
             self.conn_dict[conn] = node.isIdentified()
         conn_set = set(self.conn_dict)
         conn_set.discard(None)

neo/storage/database/importer.py

@@ -379,7 +379,7 @@ class ImporterDatabaseManager(DatabaseManager):
         db = self.db = buildDatabaseManager(conf['adapter'],
             (conf['database'], conf.get('engine'), conf['wait']))
         for x in """getConfiguration _setConfiguration setNumPartitions
-                    query erase getPartitionTable _iterAssignedCells
+                    query erase getPartitionTable iterAssignedCells
                     updateCellTID getUnfinishedTIDDict dropUnfinishedData
                     abortTransaction storeTransaction lockTransaction
                     loadData storeData getOrphanList _pruneData deferCommit

neo/storage/database/manager.py

@@ -180,6 +180,10 @@ class DatabaseManager(object):
     def erase(self):
         """"""
 
+    def restore(self, dump): # for tests
+        self.erase()
+        self._restore(dump)
+
     def _setup(self, dedup=False):
         """To be overridden by the backend to set up a database
 
@@ -532,7 +536,7 @@ class DatabaseManager(object):
                 None if data_serial is None else util.p64(data_serial))
 
     @requires(_getPartitionTable)
-    def _iterAssignedCells(self):
+    def iterAssignedCells(self):
         my_nid = self.getUUID()
         return ((offset, tid) for offset, nid, tid in self._getPartitionTable()
                               if my_nid == nid)
@@ -578,13 +582,13 @@ class DatabaseManager(object):
                 d.append(p << 48 if i is None else i + 1)
         else:
             readable_set.clear()
-        readable_set.update(x[0] for x in self._iterAssignedCells()
+        readable_set.update(x[0] for x in self.iterAssignedCells()
                                  if -x[1] in READABLE)
 
     @requires(_changePartitionTable, _getLastIDs, _getLastTID)
     def changePartitionTable(self, ptid, cell_list, reset=False):
         my_nid = self.getUUID()
-        pt = dict(self._iterAssignedCells())
+        pt = dict(self.iterAssignedCells())
         # In backup mode, the last transactions of a readable cell may be
         # incomplete.
         backup_tid = self.getBackupTID()
@@ -609,7 +613,7 @@ class DatabaseManager(object):
 
     @requires(_changePartitionTable)
     def updateCellTID(self, partition, tid):
-        t, = (t for p, t in self._iterAssignedCells() if p == partition)
+        t, = (t for p, t in self.iterAssignedCells() if p == partition)
         if t < 0:
             return
         tid = util.u64(tid)
@@ -631,7 +635,7 @@ class DatabaseManager(object):
             next_tid = util.u64(backup_tid)
             if next_tid:
                 next_tid += 1
-        for offset, tid in self._iterAssignedCells():
+        for offset, tid in self.iterAssignedCells():
             if tid >= 0: # OUT_OF_DATE
                 yield offset, p64(tid and tid + 1)
             elif -tid in READABLE:
@@ -873,7 +877,7 @@ class DatabaseManager(object):
             assert tid, tid
             cell_list = []
             my_nid = self.getUUID()
-            for partition, state in self._iterAssignedCells():
+            for partition, state in self.iterAssignedCells():
                 if state > tid:
                     cell_list.append((partition, my_nid, tid))
                 self._deleteRange(partition, tid)

neo/storage/database/mysqldb.py

@@ -965,7 +965,7 @@ class MySQLDatabaseManager(DatabaseManager):
         cmd += self._cmdline()
         return subprocess.check_output(cmd)
 
-    def restore(self, sql):
+    def _restore(self, sql):
         import subprocess
         cmd = ['mysql']
         cmd += self._cmdline()

neo/storage/database/sqlite.py

@@ -712,5 +712,5 @@ class SQLiteDatabaseManager(DatabaseManager):
         main[-1:-1] = data
         return '\n'.join(main) + '\n'
 
-    def restore(self, sql):
+    def _restore(self, sql):
         self.conn.executescript(sql)

neo/storage/handlers/identification.py

@@ -32,7 +32,7 @@ class IdentificationHandler(EventHandler):
         return self.app.nm
 
     def requestIdentification(self, conn, node_type, uuid, address, name,
-                              devpath, id_timestamp):
+                              id_timestamp, devpath, new_nid):
         self.checkClusterName(name)
         app = self.app
         # reject any incoming connections if not ready

neo/storage/replicator.py

@@ -350,7 +350,7 @@ class Replicator(object):
             try:
                 conn.ask(Packets.RequestIdentification(NodeTypes.STORAGE,
                     None if name else app.uuid, app.server, name or app.name,
-                    (), app.id_timestamp))
+                    app.id_timestamp, (), ()))
             except ConnectionClosed:
                 if previous_node is self.current_node:
                     return

neo/tests/threaded/__init__.py

@@ -383,7 +383,10 @@ class ServerNode(Node):
         assert not self.is_alive()
         init_args = self._init_args
         init_args['reset'] = False
-        assert set(kw).issubset(init_args), (kw, init_args)
+        if __debug__:
+            x = set(kw).difference(init_args)
+            assert not x or x.issubset(self.option_parser.getOptionDict()), (
+                kw, init_args)
         init_args.update(kw)
         self.close()
         self.__init__(**init_args)
@@ -852,9 +855,13 @@ class NEOCluster(object):
         expected_state = (NodeStates.PENDING
             if state == ClusterStates.RECOVERING
             else NodeStates.RUNNING)
-        for node in self.storage_list if storage_list is None else storage_list:
+        for node, expected_state in (
+                storage_list if isinstance(storage_list, dict) else
+                dict.fromkeys(self.storage_list if storage_list is None else
+                              storage_list, expected_state)
+                ).iteritems():
             state = self.getNodeState(node)
-            assert state == expected_state, (repr(node), state)
+            assert state == expected_state, (repr(node), state, expected_state)
 
     def stop(self, clear_database=False, __print_exc=traceback.print_exc, **kw):
         if self.started:
@@ -1007,18 +1014,18 @@ class NEOCluster(object):
         """Sort storages so that storage_list[i] has partition i for all i"""
         pt = [{x.getUUID() for x in x}
             for x in self.primary_master.pt.partition_list]
+        n = len(self.storage_list)
         r = []
         x = [iter(pt[0])]
-        try:
-            while 1:
-                try:
-                    r.append(next(x[-1]))
-                except StopIteration:
-                    del r[-1], x[-1]
-                else:
-                    x.append(iter(pt[len(r)].difference(r)))
-        except IndexError:
-            assert len(r) == len(self.storage_list)
+        while 1:
+            try:
+                r.append(next(x[-1]))
+            except StopIteration:
+                del r[-1], x[-1]
+            else:
+                if len(r) == n:
+                    break
+                x.append(iter(pt[len(r)].difference(r)))
         x = {x.uuid: x for x in self.storage_list}
         self.storage_list[:] = (x[r] for r in r)
         return self.storage_list

neo/tests/threaded/test.py

@@ -2815,7 +2815,6 @@ class Test(NEOThreadedTest):
             dm = s.dm
             dm.commit()
             dump_dict[s.uuid] = dm.dump()
-            dm.erase()
             with open(path % (s.getAdapter(), s.uuid)) as f:
                 dm.restore(f.read())
         with NEOCluster(storage_count=3, partitions=3, replicas=1,

neo/tests/threaded/testReplication.py

@@ -29,7 +29,7 @@ from neo.storage.database.manager import DatabaseManager
 from neo.storage import replicator
 from neo.lib.connector import SocketConnector
 from neo.lib.connection import ClientConnection
-from neo.lib.protocol import CellStates, ClusterStates, Packets, \
+from neo.lib.protocol import CellStates, ClusterStates, NodeStates, Packets, \
     ZERO_OID, ZERO_TID, MAX_TID, uuid_str
 from neo.lib.util import add64, p64, u64
 from .. import Patch, TransactionalResource
@@ -928,6 +928,39 @@ class ReplicationTests(NEOThreadedTest):
     def testReplicationBlockedByUnfinished2(self):
         self.testReplicationBlockedByUnfinished1(True)
 
+    @with_cluster(partitions=6, storage_count=4, start_cluster=0)
+    def testCloneStorage(self, cluster):
+        """
+        Test cloning of storage nodes using --new-nid instead NEO replication.
+        """
+        s01 = cluster.storage_list[:2]
+        s23 = cluster.storage_list[2:]
+        cluster.start(storage_list=s01)
+        cluster.importZODB()(6)
+        self.tic()
+        with Patch(cluster, storage_list=s01):
+            cluster.sortStorageList()
+            cluster.stop(replicas=1)
+        cluster.storage_list[:2] = s01
+        storage_dict = {}
+        for s, d in zip(s01, s23):
+            d.dm.restore(s.dm.dump())
+            d.resetNode(new_nid=True)
+            storage_dict[s] = NodeStates.RUNNING
+            storage_dict[d] = NodeStates.DOWN
+        cluster.start(storage_dict)
+        cluster.join(s23)
+        for d in s23:
+            d.resetNode(new_nid=False)
+            d.start()
+        self.tic()
+        self.checkReplicas(cluster)
+        expected = '|'.join(['U.U.|.U.U'] * 3)
+        self.assertPartitionTable(cluster, expected)
+        cluster.neoctl.tweakPartitionTable()
+        self.tic()
+        self.assertPartitionTable(cluster, expected)
+
     @with_cluster(partitions=5, replicas=2, storage_count=3)
     def testCheckReplicas(self, cluster):
         from neo.storage import checker