Update Release Candidate

component/cython/buildout.cfg

@@ -6,4 +6,4 @@ recipe = zc.recipe.egg:custom
 egg = cython
 
 [versions]
-cython = 0.29.24
+cython = 0.29.36

component/flex/buildout.cfg

@@ -14,5 +14,6 @@ md5sum = 2882e3179748cc9f9c23ec593d6adc8d
 environment =
   M4=${m4:location}/bin/m4
   PATH=${bison:location}/bin:${xz-utils:location}/bin:%(PATH)s
-# CFLAGS to workaround https://github.com/westes/flex/issues/442
-  CFLAGS=-g -O2 -D_GNU_SOURCE
+  # CFLAGS to workaround https://github.com/westes/flex/issues/442
+  # -fpic is needed to fix compilation on Fedora for slapos-node package
+  CFLAGS=-g -O2 -D_GNU_SOURCE -fpic

component/openblas/buildout.cfg

@@ -8,8 +8,8 @@ parts =
 [openblas]
 recipe = slapos.recipe.cmmi
 shared = true
-url = https://github.com/xianyi/OpenBLAS/archive/v0.3.10.tar.gz
-md5sum = 4727a1333a380b67c8d7c7787a3d9c9a
+url = https://github.com/OpenMathLib/OpenBLAS/releases/download/v0.3.24/OpenBLAS-0.3.24.tar.gz
+md5sum = 23599a30e4ce887590957d94896789c8
 
 build-common-options = NO_STATIC=1 USE_OPENMP=1 USE_THREAD=1 DYNAMIC_ARCH=1
 

component/python-2.7/buildout.cfg

@@ -9,7 +9,6 @@ extends =
   ../openssl/buildout.cfg
   ../patch/buildout.cfg
   ../readline/buildout.cfg
-  ../sed/buildout.cfg
   ../sqlite3/buildout.cfg
   ../zlib/buildout.cfg
   ../file/buildout.cfg
@@ -51,7 +50,7 @@ patches = ${python2.7-lib-patches:patches}
 url =
   http://www.python.org/ftp/python/${:package_version}/Python-${:package_version}${:package_version_suffix}.tar.xz
 pre-configure =
-  ${sed:location}/bin/sed -i -e "s/if 'curses' in ln:/if 'curses' in ln.split(os.sep)[-1]:/" setup.py
+  sed -i -e "s/if 'curses' in ln:/if 'curses' in ln.split()[0]:/" setup.py
 configure-options =
   --enable-ipv6
   --enable-unicode=ucs4

component/python3/buildout.cfg

@@ -10,7 +10,6 @@ extends =
   ../ncurses/buildout.cfg
   ../openssl/buildout.cfg
   ../readline/buildout.cfg
-  ../sed/buildout.cfg
   ../sqlite3/buildout.cfg
   ../util-linux/buildout.cfg
   ../xz-utils/buildout.cfg
@@ -32,7 +31,7 @@ executable = @@LOCATION@@/bin/${:_buildout_section_name_}
 url =
   https://www.python.org/ftp/python/${:package_version}/Python-${:package_version}${:package_version_suffix}.tar.xz
 pre-configure =
-  ${sed:location}/bin/sed -i -e "s/if 'curses' in ln:/if 'curses' in ln.split(os.sep)[-1]:/" setup.py
+  sed -i -e "s/if 'curses' in ln:/if 'curses' in ln.split()[0]:/" setup.py
 configure-options =
   --enable-ipv6
   --without-ensurepip

component/scipy/buildout.cfg

@@ -23,6 +23,7 @@ eggs = ${scipy-setup-eggs:eggs}
 
 [scipy-setup-eggs]
 recipe = zc.recipe.egg
+scripts =
 eggs =
   ${cython:egg}
   ${numpy:egg}

component/statsmodels/buildout.cfg

 [buildout]
 extends =
+  ../cython/buildout.cfg
   ../pandas/buildout.cfg
   ../scipy/buildout.cfg
 
@@ -14,5 +15,18 @@ recipe = zc.recipe.egg:custom
 egg = statsmodels
 environment = statsmodels-env
 setup-eggs =
+  ${numpy:egg}
   ${pandas:egg}
   ${scipy:egg}
+  ${cython:egg}
+  setuptools-dso
+statsmodels-patches = ${:_profile_base_location_}/statsmodels-add-setup-version.patch#8bb8eac7375e13fa8104a6aa905ef35c
+statsmodels-patch-options = -p1
+
+[statsmodels:sys.version_info < (3,10)]
+statsmodels-patches =
+statsmodels-patch-options =
+
+[statsmodels:python2]
+statsmodels-patches =
+statsmodels-patch-options =

component/statsmodels/statsmodels-add-setup-version.patch

+add a version to make this package compatible with buildout's easy_install
+
+Fixes this issue:
+
+    Installing statsmodels 0.13.5
+    Caused installation of a distribution:
+    statsmodels 0.0.0
+    with a different version.
+
+
+diff '--color=auto' -ru statsmodels-0.13.5.orig/setup.py statsmodels-0.13.5/setup.py
+--- statsmodels-0.13.5.orig/setup.py	2022-11-02 01:54:20.000000000 +0900
++++ statsmodels-0.13.5/setup.py	2023-10-26 14:12:35.157708043 +0900
+@@ -387,6 +387,7 @@
+ 
+ setup(
+     name=DISTNAME,
++    version='0.13.5',
+     maintainer=MAINTAINER,
+     ext_modules=extensions,
+     maintainer_email=MAINTAINER_EMAIL,

component/theia/buildout.cfg

@@ -47,12 +47,14 @@ pre-configure =
   # To regenerate yarn.lock, comment the line below
   cp yarn.lock %(location)s
   # Workaround https://github.com/microsoft/vscode/issues/154048
-  # Once upstream is fixed:
-  # - remove [vscode-uri] section
-  # - remove the commands below
-  # - remove component/tar/buildout.cfg
-  # - remove the "resolution" field in package.json
-  # - regenerate yarn.lock
+  # This bug is now fixed, but theia pins an old version of
+  # vscode-uri. Once theia is updated to use a more recent version
+  # of vscode-uri:
+  #   - remove [vscode-uri] section
+  #   - remove the commands below
+  #   - remove component/tar/buildout.cfg
+  #   - remove the "resolution" field in package.json
+  #   - regenerate yarn.lock
   cd %(location)s
   ${tar:location}/bin/tar -xzf ${vscode-uri:target}
   mv vscode-uri-${vscode-uri:revision} vscode-uri

component/theia/buildout.hash.cfg

@@ -19,7 +19,7 @@ md5sum = a27e2cb34e4efe2ed0d4698f505554f0
 
 [yarn.lock]
 _update_hash_filename_ = yarn.lock
-md5sum = ae0f135e9c32967cc7cbc0a708225b60
+md5sum = 09c1f7476afe3ecbf1c38891025336df
 
 [ms-python-disable-jedi-buildout.patch]
 _update_hash_filename_ = ms-python-disable-jedi-buildout.patch

component/util-linux/buildout.cfg

@@ -6,6 +6,9 @@ extends =
   ../pkgconfig/buildout.cfg
   ../xz-utils/buildout.cfg
 
+[gcc]
+min_version = 8
+
 [util-linux]
 recipe = slapos.recipe.cmmi
 shared = true

software/buildout-testing/software-py3next.cfg

+[buildout]
+extends =
+  software.cfg
+
+[python3]
+<= python3.11

software/erp5testnode/buildout.hash.cfg

@@ -18,4 +18,4 @@ md5sum = 06b0acece285ecbc0e746fa267a374b6
 
 [template-default]
 filename = instance-default.cfg.jinja.in
-md5sum = 3959e9e5e7c9f05cb341520a34ba06c9
+md5sum = 164c4610ab20a081b3db26f23566bb7c

software/erp5testnode/instance-default.cfg.jinja.in

@@ -291,15 +291,13 @@ name = $${:_buildout_section_name_}.py
 config-host = $${shellinabox-frontend:hostname}
 config-port = $${shellinabox-frontend:port}
 
-## This promise fails in a test suite
-## due to ports conflict with the testnode of the test suite
-# [shellinabox-frontend-available-promise]
-# <= monitor-promise-base
-# module = check_url_available
-# name = $${:_buildout_section_name_}.py
-# config-url = https://$${shellinabox-frontend-config:hostname}:$${shellinabox-frontend-config:port}
-# config-username = $${shellinabox-frontend-config:username}
-# config-password = $${shellinabox-frontend-config:passwd}
+[shellinabox-frontend-available-promise]
+<= monitor-promise-base
+module = check_url_available
+name = $${:_buildout_section_name_}.py
+config-url = https://$${shellinabox-frontend-config:hostname}:$${shellinabox-frontend-config:port}
+config-username = $${shellinabox-frontend-config:username}
+config-password = $${shellinabox-frontend-config:passwd}
 
 [testnode-log-frontend-promise]
 <= monitor-promise-base

software/slapos-testing/software-py2.cfg

@@ -8,3 +8,6 @@ part = python2.7
 [extra-eggs]
 eggs +=
   ${re6stnet-setup:egg}
+
+[versions]
+pathlib = 1.0.1

software/slapos-testing/software-py3next.cfg

+[buildout]
+extends =
+  software.cfg
+
+[python3]
+<= python3.11

software/slapos-testing/software.cfg

@@ -276,7 +276,6 @@ httmock = 1.2.6
 testfixtures = 6.11.0
 pyflakes = 2.0.0
 zope.testing = 4.6.2
-pathlib = 1.0.1
 psycopg2 = 2.8.6
 iniparse = 0.5
 miniupnpc = 1.9

software/theia/buildout.hash.cfg

@@ -15,7 +15,7 @@
 
 [instance-theia]
 _update_hash_filename_ = instance-theia.cfg.jinja.in
-md5sum = bf611d4551e6c2d4ea5fd22c3ae8ecfd
+md5sum = 43b3435b3bc08db42335c03b5b8fe465
 
 [instance]
 _update_hash_filename_ = instance.cfg.in

software/theia/instance-theia.cfg.jinja.in

@@ -14,6 +14,7 @@ theia-environment-parts =
 
 theia-parts =
   frontend-instance
+  slapos-standalone-bin-wrapper
   promises
 
 parts =
@@ -629,6 +630,11 @@ hash-files =
 hostname = $${slapos-standalone-config:ipv4}
 port = $${slapos-standalone-config:port}
 
+[slapos-standalone-bin-wrapper]
+recipe = slapos.cookbook:wrapper
+wrapper-path = $${directory:bin}/slapos
+command-line = $${slapos-standalone-config:base-directory}/bin/slapos
+
 
 # Slapos Standalone Autoprocessing
 # --------------------------------

software/theia/test/test.py

@@ -67,7 +67,7 @@ class TheiaTestCase(SlapOSInstanceTestCase):
     try:
       return cls._theia_slapos
     except AttributeError:
-      cls._theia_slapos = slapos = cls.getPath('srv', 'runner', 'bin', 'slapos')
+      cls._theia_slapos = slapos = cls.getPath('bin', 'slapos')
       return slapos
 
   @classmethod

stack/resilient/buildout.hash.cfg

@@ -30,7 +30,7 @@ md5sum = 1b8645835f04081861266436505fd28f
 
 [template-replicated]
 filename = template-replicated.cfg.in
-md5sum = 52762882e0d631f51d2c9e5f8b31c0b6
+md5sum = 67c863b15dbfa937babdbd620f95c1ff
 
 [template-parts]
 filename = template-parts.cfg.in

stack/resilient/template-replicated.cfg.in

@@ -48,25 +48,25 @@ config-{{ parameter_name }} = {{ dumps(parameter_value) }}
 {% for key, value in six.iteritems(monitor_dict) -%}
 config-{{ key }} = {{ value }}
 {% endfor -%}
-{% if sla_parameter_dict == {} -%}
+{% set sla_key_main = "-sla-%s%s-" % (namebase, 0) -%}
+{% set sla_key_secondary = "-sla-%s-" % (0) -%}
+{% set sla_key_main_length = sla_key_main | length -%}
+{% set sla_key_secondary_length = sla_key_secondary | length -%}
+{% set sla_dict = {} -%}
+{% for key in sla_parameter_dict.keys() -%}
+{%   if key.startswith(sla_key_main) -%}
+{%     do sla_dict.__setitem__(key[sla_key_main_length:], sla_parameter_dict.get(key)) -%}
+{%   elif key.startswith(sla_key_secondary) and key[sla_key_secondary_length:] not in sla_dict -%}
+{%       do sla_dict.__setitem__(key[sla_key_secondary_length:], sla_parameter_dict.get(key)) -%}
+{%   endif -%}
+{% endfor -%}
+{% if sla_dict == {} %}
 sla-mode = unique_by_network
 {% else %}
-{%   set sla_key_main = "-sla-%s%s-" % (namebase, 0) -%}
-{%   set sla_key_secondary = "-sla-%s-" % (0) -%}
-{%   set sla_key_main_length = sla_key_main | length -%}
-{%   set sla_key_secondary_length = sla_key_secondary | length -%}
-{%   set sla_dict = {} -%}
-{%   for key in sla_parameter_dict.keys() -%}
-{%     if key.startswith(sla_key_main) -%}
-{%       do sla_dict.__setitem__(key[sla_key_main_length:], sla_parameter_dict.get(key)) -%}
-{%     elif key.startswith(sla_key_secondary) and key[sla_key_secondary_length:] not in sla_dict -%}
-{%         do sla_dict.__setitem__(key[sla_key_secondary_length:], sla_parameter_dict.get(key)) -%}
-{%     endif -%}
-{%   endfor -%}
 {%   for key, value in six.iteritems(sla_dict) -%}
 sla-{{ key }} = {{ value }}
-{%   endfor -%}
-{% endif -%}
+{%   endfor %}
+{% endif %}
 
 {% if 'monitor-base-url' in monitor_return and not monitor_parameter_dict.get('set-monitor-url', False) -%}
 {% do monitor_url_list.append('${request-' ~ namebase ~ ':connection-monitor-base-url}') -%}
@@ -100,24 +100,24 @@ config-on-notification = ${request-pbs-{{namebase}}-{{id}}:connection-feeds-url}
 {% for key, value in six.iteritems(monitor_dict) -%}
 config-{{ key }} = {{ value }}
 {% endfor -%}
-{% if sla_parameter_dict == {} -%}
+{% set sla_key_main = "-sla-%s%s-" % (namebase, id) -%}
+{% set sla_key_secondary = "-sla-%s-" % (id) -%}
+{% set sla_key_main_length = sla_key_main | length -%}
+{% set sla_key_secondary_length = sla_key_secondary | length -%}
+{% set sla_dict = {} -%}
+{% for key in sla_parameter_dict.keys() -%}
+{%   if key.startswith(sla_key_main) -%}
+{%     do sla_dict.__setitem__(key[sla_key_main_length:], sla_parameter_dict.get(key)) -%}
+{%   elif key.startswith(sla_key_secondary) and key[sla_key_secondary_length:] not in sla_dict -%}
+{%       do sla_dict.__setitem__(key[sla_key_secondary_length:], sla_parameter_dict.get(key)) -%}
+{%   endif -%}
+{% endfor -%}
+{% if sla_dict == {} %}
 sla-mode = unique_by_network
 {% else %}
-{%   set sla_key_main = "-sla-%s%s-" % (namebase, id) -%}
-{%   set sla_key_secondary = "-sla-%s-" % (id) -%}
-{%   set sla_key_main_length = sla_key_main | length -%}
-{%   set sla_key_secondary_length = sla_key_secondary | length -%}
-{%   set sla_dict = {} -%}
-{%   for key in sla_parameter_dict.keys() -%}
-{%     if key.startswith(sla_key_main) -%}
-{%       do sla_dict.__setitem__(key[sla_key_main_length:], sla_parameter_dict.get(key)) -%}
-{%     elif key.startswith(sla_key_secondary) and key[sla_key_secondary_length:] not in sla_dict -%}
-{%         do sla_dict.__setitem__(key[sla_key_secondary_length:], sla_parameter_dict.get(key)) -%}
-{%     endif -%}
-{%   endfor -%}
 {%   for key, value in six.iteritems(sla_dict) -%}
 sla-{{ key }} = {{ value }}
-{%   endfor -%}
+{%   endfor %}
 {% endif %}
 
 [publish-connection-information]
@@ -202,21 +202,21 @@ config-{{ key }} = {{ value }}
 {% endfor -%}
 return = ssh-key notification-url feeds-url  {{ monitor_return }}
 shared = false
-{% if sla_parameter_dict == {} -%}
+{% set sla_key_main = "-sla-%s%s-" % ("pbs", id) -%}
+{% set sla_key_secondary = "-sla-%s-" % (id) -%}
+{% set sla_key_main_length = sla_key_main | length -%}
+{% set sla_key_secondary_length = sla_key_secondary | length -%}
+{% set sla_dict = {} -%}
+{% for key in sla_parameter_dict.keys() -%}
+{%   if key.startswith(sla_key_main) -%}
+{%     do sla_dict.__setitem__(key[sla_key_main_length:], sla_parameter_dict.get(key)) -%}
+{%   elif key.startswith(sla_key_secondary) and key[sla_key_secondary_length:] not in sla_dict -%}
+{%       do sla_dict.__setitem__(key[sla_key_secondary_length:], sla_parameter_dict.get(key)) -%}
+{%   endif -%}
+{% endfor -%}
+{% if sla_dict == {} %}
 sla-mode = unique_by_network
 {% else %}
-{%   set sla_key_main = "-sla-%s%s-" % ("pbs", id) -%}
-{%   set sla_key_secondary = "-sla-%s-" % (id) -%}
-{%   set sla_key_main_length = sla_key_main | length -%}
-{%   set sla_key_secondary_length = sla_key_secondary | length -%}
-{%   set sla_dict = {} -%}
-{%   for key in sla_parameter_dict.keys() -%}
-{%     if key.startswith(sla_key_main) -%}
-{%       do sla_dict.__setitem__(key[sla_key_main_length:], sla_parameter_dict.get(key)) -%}
-{%     elif key.startswith(sla_key_secondary) and key[sla_key_secondary_length:] not in sla_dict -%}
-{%         do sla_dict.__setitem__(key[sla_key_secondary_length:], sla_parameter_dict.get(key)) -%}
-{%     endif -%}
-{%   endfor -%}
 {%   for key, value in six.iteritems(sla_dict) -%}
 sla-{{ key }} = {{ value }}
 {%   endfor %}

stack/slapos.cfg

@@ -189,11 +189,11 @@ Flask = 3.0.0:whl
 frozenlist = 1.4.0:whl
 funcsigs = 1.0.2
 functools32 = 3.2.3.post2
-gevent = 20.9.0
+gevent = 23.9.1
 geventmp = 0.0.1
 gitdb = 4.0.10
 GitPython = 3.1.30
-greenlet = 0.4.17
+greenlet = 3.0.1
 h11 = 0.14.0
 h5py = 2.7.1
 idna = 3.4:whl
@@ -231,7 +231,7 @@ mistune = 0.8.4
 mock = 3.0.5
 more-itertools = 5.0.0
 mpmath = 1.0.0
-msgpack = 0.6.2
+msgpack = 1.0.5
 multidict = 6.0.4
 nbclient = 0.5.1
 nbconvert = 6.5.4
@@ -248,7 +248,7 @@ paramiko = 2.11.0
 parso = 0.7.1
 passlib = 1.7.4
 pathlib2 = 2.3.5
-patsy = 0.5.1
+patsy = 0.5.3
 pbr = 5.9.0
 pexpect = 4.8.0
 pickleshare = 0.7.4
@@ -267,7 +267,7 @@ py = 1.11.0:whl
 py-mld = 1.0.3
 pyasn1 = 0.4.5
 pycparser = 2.20
-pycurl = 7.43.0
+pycurl = 7.45.0
 pydantic = 1.9.1
 pygls = 1.1.0:whl
 Pygments = 2.9.0
@@ -294,25 +294,25 @@ scikit-learn = 0.20.4
 seaborn = 0.7.1
 Send2Trash = 1.5.0
 setproctitle = 1.1.10
-setuptools-dso = 1.7
+setuptools-dso = 2.9
 sgmllib3k = 1.0.0
 simplegeneric = 0.8.1
 singledispatch = 3.4.0.3
 six = 1.16.0
 slapos.cookbook = 1.0.329
-slapos.core = 1.10.6
+slapos.core = 1.10.7
 slapos.extension.shared = 1.0
 slapos.libnetworkcache = 0.25
 slapos.rebootstrap = 4.5
 slapos.recipe.build = 0.56
 slapos.recipe.cmmi = 0.19
 slapos.recipe.template = 5.1
-slapos.toolbox = 0.139
+slapos.toolbox = 0.140
 smmap = 5.0.0
 sniffio = 1.3.0
 sortedcontainers = 2.4.0
 soupsieve = 1.9.5
-statsmodels = 0.11.1
+statsmodels = 0.13.5+SlapOSPatched001
 stevedore = 1.21.0:whl
 subprocess32 = 3.5.4
 supervisor = 4.1.0
@@ -328,7 +328,7 @@ typeguard = 3.0.2:whl
 typing-extensions = 4.8.0:whl
 tzlocal = 1.5.1
 unicodecsv = 0.14.1
-uritemplate = 3.0.0
+uritemplate = 4.1.1
 urllib3 = 1.26.12
 wcwidth = 0.2.5
 webencodings = 0.5.1
@@ -353,10 +353,16 @@ zope.interface = 5.4.0
 zope.testing = 4.7
 zope.testrunner = 5.2
 
+[versions:sys.version_info < (3,10)]
+# keep old statsmodels by default until slapos.toolbox is updated
+statsmodels = 0.11.1
+
 # this is mostly needed for slapos-node
 # it can be removed when slapos-node uses current python3
 [versions:sys.version_info < (3,8)]
 Flask = 1.1.2
+itsdangerous = 0.24
+Jinja2 = 2.11.3
 MarkupSafe = 2.0.1
 typing-extensions = 4.7.1:whl
 Werkzeug = 2.0.2
@@ -369,15 +375,19 @@ click = 6.7
 distro = 1.6.0
 feedparser = 5.2.1
 Flask = 1.1.2
+gevent = 20.9.0
 gitdb2 = 2.0.5
 GitPython = 2.1.11
+greenlet = 0.4.17
 idna = 2.9
 importlib-metadata = 1.7.0:whl
 itsdangerous = 0.24
 Jinja2 = 2.11.3
 jsonschema = 3.0.2:whl
 MarkupSafe = 1.0
+msgpack = 0.6.2
 packaging = 16.8
+pycurl = 7.43.0
 pyparsing = 2.2.0
 pyrsistent = 0.16.1
 requests = 2.27.1
@@ -385,7 +395,9 @@ selectors34 = 1.2
 slapos.toolbox = 0.128.1
 smmap = 0.9.0
 smmap2 = 2.0.5
+statsmodels = 0.11.1
 traitlets = 4.3.3
+uritemplate = 3.0.0
 Werkzeug = 1.0.1
 wheel = 0.35.1:whl
 zipp = 1.2.0:whl